Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1081
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0630 - 20097672-20097772,20097983-20102012 33 0.18
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 32 0.41
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.94
06_01_0350 + 2534422-2535615 31 1.2
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 2.9
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 29 3.8
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.8
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 29 5.0
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.0
07_03_0078 - 13147741-13148913 28 6.6
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 28 6.6
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 28 8.8
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 8.8
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -3
Query: 324 RLPLPTLFYRLEALHLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQMRCS-SRSEP 148
+L +P + E LH D+ + W + A + HP E S E IR P + R+
Sbjct: 202 KLHVPHKGWITETLHKIDMSK-WTQQAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPA 260
Query: 147 YLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 52
+P +G G + +F D + HFG
Sbjct: 261 VIPIVGISGVGKSALAKFIFDDANVRE--HFG 290
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 423 TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLPL 313
T+P + H L + RH P L+A P S + C+LPL
Sbjct: 100 TKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 225 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 67
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 66 SGHFGLPRRTLVFKDEGTI 10
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 127 PWNSNAQAEKKTLPGPLGGVFRP 59
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 282 HLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 106
HL +++ RH V SP R+ + RT P R + R PSI +RT +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298
Query: 105 QKRKLFPDLSAASSGHFG 52
+ P + + FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 434 HEHRPDPAPDR-IRFPSKPDTPRSSEPILIPKLRIQFADFPYLHYS 300
H HRP P P R R P S+ P++ P QF H+S
Sbjct: 278 HVHRPTPPPHRGFRAPFTTPPSTSTPPVVPPTGFAQFGTTQAAHFS 323
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 402 HPLPVQTRHAPVLRANP 352
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 472 MRPQKLYILNMTPRKSSYVSDWIRTRVLRPSADLPS 579
+R Q L ++N++PR S+ W L P+ +LPS
Sbjct: 428 LRMQALEMVNLSPRASTPSPSWRLPACLSPTPNLPS 463
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 396 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 283
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 539 SGPAFSGLPRIFLAVSRVGFVSCAI 613
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 400 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPA--ADMGR 251
SAS P+P +P P S SL R+ S +Y G W A A GR
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 457 NSLKRT*RTNIDQTRHRTASASRPNPTRPGPQSQS 353
+SLKR TN+ QT RT + RPG ++QS
Sbjct: 310 SSLKRV--TNVKQTPRRTIPSMNHGGDRPGKENQS 342
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 255 DEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 133
++ AR PSP RS R+P + R S RS Y P +
Sbjct: 508 EKDARGKSRSPSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,534,797
Number of Sequences: 37544
Number of extensions: 536854
Number of successful extensions: 2108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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