Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1081
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical ... 28 5.9
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 28 5.9
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 5.9
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 5.9
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 5.9
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 5.9
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 28 7.8
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 28 7.8
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 7.8
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 416 PAPDRIRFPSKPDTPRSSEPILIPKLRI 333
P P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical
protein F33E11.6a protein.
Length = 338
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 436 RTNIDQTRHRTASASRPNPTRPGPQSQSL 350
+TNI Q+R + +P TRPGP +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 436 RTNIDQTRHRTASASRPNPTRPGPQSQSL 350
+TNI Q+R + +P TRPGP +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -2
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1220 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1277
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1278 HRALNDLELNSPL-ARSTPNEEYRIP 1302
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -2
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 238 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 295
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 296 HRALNDLELNSPL-ARSTPNEEYRIP 320
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -2
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -2
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 493 ILNMTPRKSSYVSDWIRTRVLRPSADLPSR 582
+LN+ + SSY DWI V D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 493 ILNMTPRKSSYVSDWIRTRVLRPSADLPSR 582
+LN+ + SSY DWI V D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 385 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 278
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,054,176
Number of Sequences: 27780
Number of extensions: 412134
Number of successful extensions: 1440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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