Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1081
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28250.1 68418.m03425 Ulp1 protease family protein contains P...    29   2.4  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    29   2.4  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    29   2.4  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    29   2.4  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.2  
At5g42370.1 68418.m05159 expressed protein                             29   4.2  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.2  
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265...    29   4.2  
At3g60520.1 68416.m06769 expressed protein                             28   5.6  
At1g76965.1 68414.m08961 glycine-rich protein                          28   5.6  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.6  
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT...    28   7.3  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   9.7  
At5g22390.1 68418.m02612 expressed protein                             27   9.7  
At2g20760.1 68415.m02440 expressed protein                             27   9.7  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   9.7  

>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 939

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 463 NTNSLKRT*RTNIDQTRHRTASASRPNPTRPGPQS 359
           NT  L+R  +  +  TR  TASA+  N T+P P++
Sbjct: 373 NTVGLRRKQKIPVVDTRTSTASAAAGNGTKPNPEA 407


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 481 EAALY*NTNSLKRT*RTNIDQTRHRTASASRPNPTRP 371
           E   Y NT+  KR     ID   H+  ++S PNP  P
Sbjct: 103 EVKNYWNTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 490 YILNMTPRKSSYVSDWIRTRVLRPSADLPSRKSCRFRFVRDRHDSV--RPP 636
           Y  +  P K + V +W++  +L+  ADL    S RF       D V  +PP
Sbjct: 391 YAASSVPPKKAPVPNWLKEELLKKKADLGRPSSGRFEERESMDDDVLYKPP 441


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 490 YILNMTPRKSSYVSDWIRTRVLRPSADLPSRKSCRFRFVRDRHDSV--RPP 636
           Y  +  P K + V +W++  +L+  ADL    S RF       D V  +PP
Sbjct: 378 YAASSVPPKKAPVPNWLKEELLKKKADLGRPSSGRFEERESMDDDVLYKPP 428


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 203 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 69
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 142 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 32
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 5   SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 136
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
           At1g08760, At1g08740, At2g29240, At1g35650
          Length = 751

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 424 DQTRHRTASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 281
           + T+  T+      PTRPG +S SL R  G+N PT+ T +  +   SS
Sbjct: 485 EPTQTTTSIGRLSPPTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531


>At3g60520.1 68416.m06769 expressed protein
          Length = 129

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 370 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPR 230
           G  S+  +RS  S+    +    ++   SS   PAAD G+TG  SPR
Sbjct: 69  GGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPR 115


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 419 DPAPDRIRFPSKPDTPRSSEPILIPKLRIQFAD 321
           DP    + FP KP+ P    P  +P+L + F D
Sbjct: 92  DPGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 198 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 100
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
           / homeodomain containing protein 1 (H1) identical to
           homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
           [Arabidopsis thaliana]
          Length = 383

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 415 RHRTASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 311
           RH T  + +P P R   ++ SL  +   NLPT+LT
Sbjct: 18  RHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLT 52


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 393 PVQTRHAPVLRANP----YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWDEPA 244
           P  +RH P+ + +P    Y++     CR PL  L Y     +    LR W  PA
Sbjct: 68  PCHSRH-PLKKVSPETIDYTDGKCQFCRSPLVDLMYHCSICNFSVDLRCWLNPA 120


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 77  ERSGKSFLFCLSVRVPWNPIEG 142
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At2g20760.1 68415.m02440 expressed protein
          Length = 338

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 452 AKTNITHEHRPDPAPDRIRFPSKPDTPRSSE 360
           A   +T E RP PA D     +KPD   S E
Sbjct: 292 ADPKVTEEKRPSPAKDASVETAKPDAAASGE 322


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 240 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 151
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,290,942
Number of Sequences: 28952
Number of extensions: 393534
Number of successful extensions: 1291
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)