Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    27   0.23 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   0.92 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.6  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +2

Query: 395 FISKFRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSASSKTCLYSAVAWEKLSSVWPL 574
           F++ F   + +  +S +L+K +++  V Y+I    L       C Y   +W    S   L
Sbjct: 293 FLNNFYFIIFQVFESFYLHKATTLETVYYFISLGLLILRLVSVCFYG--SWINEESKLSL 350

Query: 575 SYRSTSPPTLY 607
              S  P  +Y
Sbjct: 351 DLLSYVPREVY 361


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 230 LSNLIKNIVKYENDHITQKRIKYSLHVTI*NSTNFYIIPLQICMIFFV 373
           L NL KN+VK   DH       YSLH+ +  +  F ++     ++ +V
Sbjct: 233 LVNLHKNLVKVAKDH----NSLYSLHLLLWITVTFILLVGDSYIVMYV 276


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 573 YHTGLHLRRHCIEVANAEHVDILVVQKKSW 662
           +HT + + R C+   N +  D L+   ++W
Sbjct: 475 WHTWMPVMRICVSAWNPKDCDPLITLIETW 504


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 IVKYENDHITQKRIKYS 301
           +  Y+N+ +T  +IKY+
Sbjct: 181 VTAYQNEEVTALKIKYN 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,981
Number of Sequences: 336
Number of extensions: 4574
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)