Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    57   3e-09
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    31   0.25 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    29   0.58 
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    27   3.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   4.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.5  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 29/49 (59%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIH-NQDDCPNYFPNS 655
           DTHRHRLGAN+ +IPVN P K  V  Y RDGP  ++ NQ + PNY P+S
Sbjct: 346 DTHRHRLGANFEQIPVNSP-KCPVFNYSRDGPMNVNGNQGNWPNY-PSS 392



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 493 IANIVDHLKDAAAFIQERAIKIFSQVHPELGNKV 392
           + N+  HL  A + ++ER   +F++V  ELG ++
Sbjct: 448 VKNVAGHLSGAISPVRERQYGVFTRVDSELGRRI 481


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +1

Query: 523 LFIQCCRLGEVVLSLATIIPVYISADIVSRLQTLSTWTFLWSRKRVGEIVRAVVLIVNSL 702
           +F+   ++G +  +L T +   +   IV  LQ +  W + W ++R G + R     + SL
Sbjct: 339 VFVDNYKMGYMGANL-TYLNFLVGVTIVVMLQPIQNWLYRWDKRRHGGVARPEARFLISL 397

Query: 703 RSI 711
            ++
Sbjct: 398 LTV 400


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 407 FRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFS-ASSKTC 526
           FR YLR+  +  F+      + +  Y+GNS +F   SSK C
Sbjct: 226 FRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNC 266


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +2

Query: 344 PLQICMIFFVRS*TSCYFISKFRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSASSKT 523
           P+ + MI    S T     + +   L  D+ +     R +   ++Y IG  S F    K+
Sbjct: 101 PIYLSMII-AWSITEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159

Query: 524 CLYSAVAWEKLSSVWPLSYRSTSPPTLY 607
            + +   W     +WP+   S  PP LY
Sbjct: 160 RIAAQYVWSLNKLLWPI-LMSIYPPGLY 186


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 218 VLIQLSNLIKNIVKYENDHITQKRIKYSLHVT 313
           V + LS+L+  I+KY+   +TQ + KY   V+
Sbjct: 271 VTVSLSDLLLIILKYDKPFVTQYKEKYFKRVS 302


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 502 QRAIANIVDHLKDAAAFIQERAIK 431
           +R +  I+DHL  +   IQE+A+K
Sbjct: 338 KRILEIIIDHLGSSVPLIQEKALK 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,081
Number of Sequences: 5004
Number of extensions: 73927
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)