Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299...    56   2e-08
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176...    46   3e-05
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...    44   2e-04
11_06_0198 - 21158350-21159528                                         29   3.2  
03_05_0671 + 26608953-26609671,26609775-26610495                       29   3.2  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   9.9  

>06_03_1479 +
           30428488-30428502,30428619-30428715,30429627-30429904,
           30430256-30431032,30431254-30431343,30431538-30431605,
           30431696-30431789,30431902-30431961
          Length = 492

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 37/103 (35%), Positives = 48/103 (46%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQR 619
           DT RHRLG NYL +PVN P K A      DG     ++D+  NYFP+ F   +   +   
Sbjct: 350 DTQRHRLGPNYLMLPVNAP-KCAYHNNHHDGSMNFMHRDEEVNYFPSRFDAARHAEKVP- 407

Query: 618 LQPRYNVGGDVDRYDSGQTEDNFSQATALYKQVFDDALNNELL 490
           + PR   G           E+NF QA   Y+  FD A  +  L
Sbjct: 408 IPPRVLTG--CREKCVIDKENNFQQAGERYRS-FDPARQDRFL 447


>03_01_0223 -
           1766292-1766442,1767621-1767676,1767798-1767891,
           1768004-1768071,1768441-1769585,1770072-1770168,
           1770265-1770279
          Length = 541

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQECPR 628
           DT RHRLG NYL +P N P K A      DG     ++D+  +YFP+ +   +  PR
Sbjct: 350 DTQRHRLGPNYLLLPPNAP-KCAHHNNHYDGFMNFMHRDEEVDYFPSRYDPAKHAPR 405


>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQR 619
           DT R+RLG NYL +PVN P K A      DG     ++D+  +Y+P+  +  +  P    
Sbjct: 362 DTQRYRLGPNYLMLPVNAP-KCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTP- 419

Query: 618 LQPRYNVG 595
           + PR  VG
Sbjct: 420 ITPRPVVG 427


>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 546 GRSCPQSGHYHTGLHLRRHCIEVANAEH--VDILVVQKKSWGNS*GSRLDCE*LEVHHAG 719
           G  C +   +H     ++ CI+     H   D +V ++   G+    R  C+    HH  
Sbjct: 211 GDRCRKQCQHHHDQWKKQQCIQDCRYHHRQEDDVVEEEDGHGDQ-QCRKQCQ----HHHD 265

Query: 720 RWKQQLCMDNLQEF 761
           +WK+Q CM + +++
Sbjct: 266 QWKKQQCMQDCRQW 279


>03_05_0671 + 26608953-26609671,26609775-26610495
          Length = 479

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 717 QRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQTED 556
           Q DGP  +H  D C NY  N      E    +     Y    D   +++   ED
Sbjct: 319 QNDGPWTLHYFDYCENYDQNDIDAHYEGYINEDYNEEYIAAQDCKHFEAASYED 372


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 747 CPYKVAVSTYQRDGPQA---IHNQDDCPNYFPNSFSGPQECPRAQRLQPRYN 601
           CPY+V V+ +  + PQA   +  +D+  NY P       +       QP Y+
Sbjct: 281 CPYQVPVNAFVEESPQAGNSVPLEDNRGNYSPVKVEANNDNGSINPDQPEYD 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,234,062
Number of Sequences: 37544
Number of extensions: 408699
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)