Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   7.6  
SB_48989| Best HMM Match : Ank (HMM E-Value=7.6e-05)                   28   7.6  

>SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = -3

Query: 505 KQRAIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAGLAPYK 368
           + R + NI  H+KDA  FIQ+R ++ F++VHP+ GN +A  L  ++
Sbjct: 41  RMRLVKNIAGHVKDAKDFIQKRCVQQFTKVHPDFGNGIARELQKHQ 86



 Score = 31.5 bits (68), Expect = 0.82
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -1

Query: 675 PNYFPNSFSGPQE 637
           PNYFPNSFSGP +
Sbjct: 4   PNYFPNSFSGPMD 16


>SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = +1

Query: 484 YWQ*LVV*RIIKNLFIQCCRLGEVVLSLATIIPVYISADIVSRLQTLSTWTFLWSRKRVG 663
           YW   +V  + + L I   +L    + L +++PV+  A+ +   +   T    WS K+V 
Sbjct: 107 YWA--IVHPMKRQLSITQSKLVIAFIWLGSVVPVFPYANSLKFTRETHTCEEYWSSKKVR 164

Query: 664 EIVRAVVLIVNSLRSITLVG 723
           EI  AV+ +   +  + ++G
Sbjct: 165 EIFTAVIFVFQYVLPLGVIG 184


>SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 87  CTIFFCFKT-QNLHPLNLHRSKFQLSILRVFSVQKKLPIFIDYSLY 221
           C +F  FK+ +N+  L L    F L+I+ +  V   +P+F+DY L+
Sbjct: 36  CALFVQFKSMRNVVKLGL---VFDLAIVELLDVMVNIPLFMDYYLF 78


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -1

Query: 744  PYKVAVSTYQRDGPQAIHNQDDCPNYFPN-SFSGPQE------CPRAQRLQPRYNVGGDV 586
            P +V+V   +  GP+ + +Q+  PN  P   + G QE       P A +       GGD 
Sbjct: 2506 PDEVSVPPDRVPGPEYLEDQEKLPNKVPGPEYPGDQEQLLQNCAPPAIKTPEEEKTGGDF 2565

Query: 585  DRYDSGQTEDNFSQATALYKQVFDDALNNELLP 487
               +  + + N        K  +DDA   E+ P
Sbjct: 2566 VTEEEPEKKKN--------KPKYDDAFEEEIFP 2590


>SB_48989| Best HMM Match : Ank (HMM E-Value=7.6e-05)
          Length = 585

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 215 LVLIQLSNLIKNIVK-YENDHITQKRIKYSLHVTI*NSTN 331
           + +I ++N+IK ++K YE+   T      + ++T  NSTN
Sbjct: 300 IYIIMMTNIIKTLIKYYEDSDTTTSSTNTNNNITAPNSTN 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,174,400
Number of Sequences: 59808
Number of extensions: 505011
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)