Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   7.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   7.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -2

Query: 560 RTTSPKRQHCINKFLMMR*TTSYCQYSRSPQGCCCVYSRKSYQD 429
           R  S K Q   N + +   +  +  + +    CC V+S   Y D
Sbjct: 113 RNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYND 156


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 632 HVLSVCNLDTMSAEM*TGMIVARLRTTSPKRQHC 531
           H+L  C+ DT   EM    I   +        HC
Sbjct: 170 HILDDCDNDTYGLEMSVDFIKGSISNIDGAEDHC 203


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 227 QLSNLIKNIVKYENDHITQKRIKY 298
           +L N+   I++ END I Q+ IK+
Sbjct: 388 ELPNVGDEILEVENDKILQEVIKF 411


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 496 AIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAGLAPYKKY 362
           A+A       D    + ++ IK   +  PEL + +A    P KKY
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKY 115


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 496 AIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAGLAPYKKY 362
           A+A       D    + ++ IK   +  PEL + +A    P KKY
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKY 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,717
Number of Sequences: 438
Number of extensions: 4806
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)