Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1080
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...    51   1e-06
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...    48   7e-06
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...    47   2e-05
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...    46   3e-05
At3g12440.1 68416.m01549 extensin family protein contains simila...    30   1.5  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    29   3.6  
At5g61390.1 68418.m07702 exonuclease family protein contains exo...    29   4.7  
At5g48170.1 68418.m05950 F-box family protein contains Pfam PF00...    28   8.3  

>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 32/91 (35%), Positives = 47/91 (51%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQR 619
           DT RHRLG NYL++PVN P K A      +G     ++D+  NY+P+ F  P  C  A++
Sbjct: 350 DTQRHRLGPNYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEINYYPSKFD-PVRC--AEK 405

Query: 618 LQPRYNVGGDVDRYDSGQTEDNFSQATALYK 526
           +    N    +      + E+NF QA   Y+
Sbjct: 406 VPTPTNSYTGIRTKCVIKKENNFKQAGDRYR 436


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/55 (43%), Positives = 32/55 (58%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQEC 634
           DT RHRLG NYL++PVN P K A      +G     ++D+  NY+P+ F  P  C
Sbjct: 350 DTQRHRLGPNYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEINYYPSKFD-PVRC 402


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPNSF 652
           DT RHRLG NYL++PVN P K A      +G     ++D+  NYFP+ +
Sbjct: 350 DTQRHRLGPNYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEVNYFPSRY 397


>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = -1

Query: 798 DTHRHRLGANYLKIPVNCPYKVAVSTYQRDGPQAIHNQDDCPNYFPN 658
           D+ RHRLG NYL++PVN P K A      DG     ++D+  NYFP+
Sbjct: 350 DSQRHRLGPNYLQLPVNAP-KCAHHNNHHDGFMNFMHRDEEVNYFPS 395


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 569 PLSYRSTSPPTLYRGCKR*ARGHSCGP 649
           P  YRS SPP LYR     AR  S  P
Sbjct: 128 PAQYRSVSPPALYRSVSPPARYRSVSP 154


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2271

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -1

Query: 735 VAVSTYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQTED 556
           V VSTY     QA      CPN    + + P++  + Q L+    +GG V+  +SGQ  D
Sbjct: 483 VEVSTYLPQA-QAYKANVVCPN---KNQADPEKFYQNQLLESETYIGGHVECLESGQLID 538

Query: 555 NFSQ 544
           N  +
Sbjct: 539 NLGR 542


>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 636 CPRAQRLQPRYNVGGDVDRYDSGQTEDNFSQATALYKQVFDDALNNEL 493
           CP A R+     + GD+DRY +   +  FS ATA  K +  +    E+
Sbjct: 404 CPTA-RIHIPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEI 450


>At5g48170.1 68418.m05950 F-box family protein contains Pfam
           PF00646: F-box domain; similar to unknown protein
           (pir||T09884);
          Length = 157

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +2

Query: 464 ILEVIYYIGNSSLFSASSKTCLYSAVAWEKLSSVW-PLSYRSTSP-PTL 604
           ++E++  +  SSL SA+    L+SAVA  +  S+W  L +R  SP P+L
Sbjct: 35  LVEILRRLDGSSLCSAACVCRLWSAVA--RNDSIWEELCFRQVSPRPSL 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,038,615
Number of Sequences: 28952
Number of extensions: 355091
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)