Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1078
         (782 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jag...    33   1.2  
U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein.               33   1.2  
U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jag...    33   1.2  
BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille synd...    33   1.2  
BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille synd...    33   1.2  
BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille synd...    33   1.2  
AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille synd...    33   1.2  
AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein J...    33   1.2  
AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein.              33   1.2  
X04701-1|CAA28407.1|  705|Homo sapiens protein ( Human mRNA for ...    31   4.7  
M14058-1|AAA51851.1|  705|Homo sapiens C1R protein.                    31   4.7  
BC035220-1|AAH35220.1|  705|Homo sapiens complement component 1,...    31   4.7  
AB083037-1|BAC19850.2|  705|Homo sapiens r subcomponent of compl...    31   4.7  

>U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jagged
           protein.
          Length = 1214

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 650 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 705

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 706 TCYDEGDAFKCM 717


>U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jagged
           1 protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille
           syndrome) protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille
           syndrome) protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille
           syndrome) protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille
           syndrome) protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein
           Jagged 1 protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein.
          Length = 1218

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGNGG 518
           +C T +   +QN  H  G    L+   +CD   G       ++ S+C     +A+  NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718

Query: 519 SNYDSLKVAKCL 554
           + YD     KC+
Sbjct: 719 TCYDEGDAFKCM 730


>X04701-1|CAA28407.1|  705|Homo sapiens protein ( Human mRNA for
           complement component C1r. ).
          Length = 705

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 583 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 693
           D +  HCPY    +  A G  +GE  GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279


>M14058-1|AAA51851.1|  705|Homo sapiens C1R protein.
          Length = 705

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 583 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 693
           D +  HCPY    +  A G  +GE  GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279


>BC035220-1|AAH35220.1|  705|Homo sapiens complement component 1, r
           subcomponent protein.
          Length = 705

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 583 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 693
           D +  HCPY    +  A G  +GE  GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279


>AB083037-1|BAC19850.2|  705|Homo sapiens r subcomponent of
           complement component 1 protein.
          Length = 705

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 583 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 693
           D +  HCPY    +  A G  +GE  GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,143,544
Number of Sequences: 237096
Number of extensions: 2466615
Number of successful extensions: 5987
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5986
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)