Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1078
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 33 0.17
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 33 0.17
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 33 0.17
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 33 0.17
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.8
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.8
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 8.7
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 332 SRTKRNRHDLTARKIRGRPENAGPDPSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 159
S KR L R+ RPE S+ D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 158 NARTSTRPGTGRIRFPSKPDT 96
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 332 SRTKRNRHDLTARKIRGRPENAGPDPSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 159
S KR L R+ RPE S+ D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 158 NARTSTRPGTGRIRFPSKPDT 96
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 332 SRTKRNRHDLTARKIRGRPENAGPDPSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 159
S KR L R+ RPE S+ D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 158 NARTSTRPGTGRIRFPSKPDT 96
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 332 SRTKRNRHDLTARKIRGRPENAGPDPSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 159
S KR L R+ RPE S+ D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 158 NARTSTRPGTGRIRFPSKPDT 96
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 378 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 509
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 162 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 49
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 378 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 509
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 761 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 642
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 761 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 642
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -1
Query: 758 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 642
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,658
Number of Sequences: 27780
Number of extensions: 381091
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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