Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1077
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    40   4e-04
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    38   0.002
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    35   0.014
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    33   0.044
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    30   0.31 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   5.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.8  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 36  ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
           E   IAS   + +MPTFVF +NGK++D  +GAN
Sbjct: 62  EQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 36  ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
           +  +IA+E  +++MP+F   KNG+K++E  GAN
Sbjct: 59  QLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   DSIXXXXXXXXECEDIASEYNINSMPTFVFVKNGKKLDEFSG 128
           D I        E  D+ SEY+I   PT    KNGK++ ++SG
Sbjct: 71  DGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 45  DIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
           DIA  +++N++P FV +   K L   SGAN
Sbjct: 64  DIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 45  DIASEYNINSMPTFVFVKNGKKLDEFSGANV 137
           DIA +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 270 KHFLFIIKNVYMFFFFNSILVSIGGCVQL 184
           +HF  +I N+  FF  N+ L  I GC  L
Sbjct: 651 RHFELLINNLKKFFLTNNDLQIIQGCTIL 679


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 263 FYSLLKTYTCFFFLIP 216
           F SL++ + CFFF+ P
Sbjct: 61  FLSLVRGFVCFFFMFP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,247
Number of Sequences: 5004
Number of extensions: 60625
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)