Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1077
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     38   0.012
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           32   0.44 
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)           28   9.4  

>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 39  CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
           C+++A++  + +MPTF F KN  K+DE  GA+
Sbjct: 69  CQELAAKQGVTAMPTFQFFKNKVKVDEVRGAD 100


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 36  ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
           +C+  A    I +MPTF F  N  K+DE  GA+
Sbjct: 69  QCQLTAESCGIRAMPTFHFYHNKAKIDELRGAD 101


>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 45  DIASEYNINSMPTFVFVKNGKKLDEFSG 128
           ++A  + +N++PT + +K GK +++F G
Sbjct: 36  ELAFNFGVNAVPTVIGMKGGKVINKFEG 63


>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
          Length = 472

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 57  EYNINSMPTFVFVKNGKKLDEFSGAN 134
           +YN+  +PT     +GK ++EF G N
Sbjct: 208 KYNVKFLPTIYLFHDGKFVEEFEGNN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,787,245
Number of Sequences: 59808
Number of extensions: 396236
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)