Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1077
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 48 5e-06
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 41 8e-04
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 41 8e-04
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 40 0.001
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 40 0.001
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 40 0.001
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 40 0.001
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 36 0.031
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 36 0.031
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 36 0.031
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 36 0.041
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 32 0.51
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 29 3.6
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 28 8.2
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
EC+ + EY INSMPTF+ + +G K D+FSGAN
Sbjct: 62 ECDGVGEEYEINSMPTFLLIVDGIKKDQFSGAN 94
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 45 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
DI YNI++MPTF+F+KN +++D GAN
Sbjct: 66 DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 45 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
DI YNI++MPTF+F+KN +++D GAN
Sbjct: 66 DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 45 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
DI YNI++MPTF+F+KN +++D GAN
Sbjct: 2 DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 31
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 140
E ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 68 EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 140
E ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 67 EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 140
E ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 67 EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 140
E ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 68 EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 39 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 39 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 39 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 36 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 134
EC A+ Y +N+MPTF+ NG+K GA+
Sbjct: 62 ECRGTAATYGVNAMPTFIAFVNGQKKATIQGAD 94
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 45 DIASEYNINSMPTFVFVKNGKKLDEFSG 128
++A +Y I+++PT KNG+K+ FSG
Sbjct: 75 ELAMDYGISAVPTVFAFKNGEKISGFSG 102
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 48 IASEYNINSMPTFVFVKNGKKLDEFSG 128
I+ + I + PT VF NGK++D G
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDG 91
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 48 IASEYNINSMPTFVFVKNGKKLDEFSG 128
I+ + I + PT VF NGK++D G
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDG 91
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 267 VFNVCNEFEDINFLCL---QP-LECKKYWFCC 350
VFNV F +INFLCL +P L K Y+ C
Sbjct: 19 VFNVLGLFGNINFLCLTYIKPALRSKSYYIQC 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,126
Number of Sequences: 27780
Number of extensions: 337156
Number of successful extensions: 911
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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