Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1077
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   1.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 393 FTTQTVFLFWFFLPSGC*GTLMYELLCFYFYFCPAYSNVNLTNTNQCVR 539
           +TT T+    F L SG  G  +  L    +Y   +  N+N  NT Q V+
Sbjct: 235 YTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSHNLNYVNTEQFVK 283


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 477 YFYFCPAYSNVNLTNTN 527
           +FYF P Y N N+   N
Sbjct: 216 FFYFDPRYGNYNINGFN 232


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 687 FCVFCIIYKNMYVTEYCYIDK 749
           F V CI+   +Y   YCY  K
Sbjct: 201 FYVPCIVMLGIYCRLYCYAQK 221


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 184 LVSIYLCLRIVVLSLSTLAPE 122
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 184 LVSIYLCLRIVVLSLSTLAPE 122
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 710 IYNAKYTETIWVCTSCTL 657
           +YN K T TI   T C L
Sbjct: 171 LYNCKRTATITAATDCQL 188


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 258 FIIKNVYMFFFFNSIL 211
           FI+ N ++F +FNS++
Sbjct: 16  FILINYFIFLYFNSLV 31


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 59  LAGDVLALINVHLHND 12
           ++G V  LIN+HL +D
Sbjct: 169 ISGTVFDLINIHLFHD 184


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 483 KNKNITIHTLKFLSNHLVKKTKIE 412
           ++  + I+ LKFL    VK +K+E
Sbjct: 335 ESNTMFINILKFLKQKYVKNSKLE 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,344
Number of Sequences: 438
Number of extensions: 4088
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)