Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1076
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    35   0.011
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    33   0.061
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    32   0.11 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    31   0.19 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    31   0.19 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    30   0.43 
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.7  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.0  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    27   3.0  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    27   4.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   5.3  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   7.0  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   7.0  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.2  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 6   WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIK 182
           W   +I NP+Y  D +      +  VG +LW ++    F +  +      A+  G E   
Sbjct: 363 WYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHSIEDAERLGNETFL 422

Query: 183 KRQEGEKKMKSEQDEAERE 239
            + + E+++ S+Q+  E++
Sbjct: 423 PKLKAERELLSKQESMEKQ 441


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
           +++ E  +K++E EKK+K +Q EA+REK   E
Sbjct: 659 RQKREEKQKQKEREKKLKKQQQEADREKMARE 690


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 153 AAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAESLXXXXXXXXXXXXLETQR 311
           A   R +++  R+E ++K+K +++EA R+KE+ + +            LE Q+
Sbjct: 160 ATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKELERQK 212


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 141 DDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
           D+  AAK+  +  KK  + EKK K E+ E + +K+K+E
Sbjct: 437 DEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 162 ERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
           E GE   K++E E+K ++E+ E ++EK+K
Sbjct: 276 ESGEYFLKKEEKERKKRAEKKEQQKEKKK 304


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 406 LHARTLRTPRYLMSWHSLINHNSLQLI 326
           LH  +L T RY MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 162 ERGEVIKKRQEGEKKMKSEQDEAERE 239
           E GE++K+  + EKK+K++ +  E E
Sbjct: 209 ENGEILKRLVKKEKKLKNDNERLENE 234


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 105 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREK 242
           KS T+F D+  IT  PA+ K+R    KK+  G  +     ++ E ++
Sbjct: 20  KSETVFLDEAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQR 66


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 153 AAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAES 257
           AAK R +  KK++E E++++  Q+ A+++ E  E+
Sbjct: 399 AAKIRADEEKKKKEREEQVRLLQESADKDAEMNEA 433



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   PWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIK 182
           P V+  I   +Y   +N  K  ++C      WQ ++     D + T    A +E     K
Sbjct: 636 PRVYKIIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNNKD-MQTKAKRAMRETMVFWK 694

Query: 183 K--RQEGEKKMKSEQDEAEREKEKAE 254
           +  R E + + K+E++  +R K++ E
Sbjct: 695 RNERVERDLRKKAEREALDRAKKEEE 720


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 33  EYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDF---LITDDPAAAKERGEVIKKRQEGEK 203
           E T   N+ ++ E+  +G +    +S  +F D    +I  D A  +E      +RQ G+ 
Sbjct: 189 EITIVPNVQQQPEL-PLGKNSGNRQSSKLFADLSKPIIETDAAEIEEVSAEKARRQFGKN 247

Query: 204 KMKSEQDEAEREKEK 248
            ++  QD  E EK+K
Sbjct: 248 GIRLSQDAQEEEKQK 262


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 180 KKRQEGEKKMKSEQDEAER---EKEKAESL 260
           KK QE EK+  + + +AER   EKE+ ESL
Sbjct: 42  KKEQEAEKRKAALERKAERERLEKEEMESL 71


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
           K+R +  + RQ+  +++K E++  +RE+EK
Sbjct: 82  KQRAQEERIRQKEAERLKREKERQQREQEK 111



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 162 ERGEVIKKRQEGEKKMKSEQDEAEREKEKAESL 260
           E+ E  + R + +++ K E+D+  REKE+A+ L
Sbjct: 128 EKLEKERIRLQEQQRRKEERDQKLREKEEAQRL 160


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 147 PAAAKERGEVIKKRQEGEKKMKSE 218
           PAA +E+ E  KKRQ  E++ K +
Sbjct: 282 PAAEREKVEKAKKRQAEERRRKQQ 305


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 366 DIKYLGVRSVRAWRILFLKPLVAQSSTIP 452
           D+K  GV   RA R+L L  +V   +T+P
Sbjct: 347 DVKSKGVDGARAERVLELINIVTNKNTVP 375


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
 Frame = +3

Query: 156 AKERGEVIKKRQEGE-------KKMKSEQDEAEREKEKAES 257
           A E  +V+K+RQE E       K++K ++DE   +++++ES
Sbjct: 604 AIENIQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSES 644


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 129  FLITDDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAES 257
            F++ D   + K    V  + ++G K +    +EAER+K  AES
Sbjct: 1233 FMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEAERKKALAES 1275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,714
Number of Sequences: 5004
Number of extensions: 54534
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)