Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1076
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 75 5e-14
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 73 3e-13
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 73 3e-13
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 72 4e-13
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi... 47 1e-05
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin... 43 3e-04
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 34 0.092
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 33 0.28
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 31 1.1
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 30 1.5
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 30 2.0
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 29 2.6
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 29 2.6
At5g41320.1 68418.m05022 expressed protein 29 3.5
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 29 3.5
At3g27570.1 68416.m03445 expressed protein 29 4.6
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 28 6.0
At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family... 28 6.0
At2g32360.1 68415.m03955 ubiquitin family protein contains INTER... 28 6.0
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 28 6.0
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 8.0
At4g12740.1 68417.m02001 adenine-DNA glycosylase-related / MYH-r... 28 8.0
At3g31950.1 68416.m04046 hypothetical protein 28 8.0
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 28 8.0
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 28 8.0
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 28 8.0
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIK 182
W P IDNPE+ D LY ++ VG++LWQVKSG++FD+ L++DDP AK+ E
Sbjct: 293 WKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWG 352
Query: 183 KRQEGEKKMKSEQDEAEREKEKAES 257
K ++ E K+ DEAE+++E+ ES
Sbjct: 353 KHKDAE---KAAFDEAEKKREEEES 374
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIK 182
W +P IDNPE+ D +LY I G+++WQVK+G+IFD+ LI DDPA A+ +
Sbjct: 245 WKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFA 304
Query: 183 KRQEGEKKMKSEQDEAEREKEKAES 257
+ +E EK++ +E ++ + +E E+
Sbjct: 305 QHRESEKELFAEAEKERKAREDEEA 329
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIK 182
W +P IDNPE+ D +LY I G+++WQVK+G+IFD+ LI DDPA A+ +
Sbjct: 299 WKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFA 358
Query: 183 KRQEGEKKMKSEQDEAEREKEKAES 257
+ +E EK++ +E ++ + +E E+
Sbjct: 359 QHRESEKELFAEAEKERKAREDEEA 383
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIK 182
W P IDNP++ D LY ++ VGL+LWQVKSG++FD+ LI DDP AK+ E
Sbjct: 293 WEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWG 352
Query: 183 KRQEGEKKMKSEQDEAEREKEKAES 257
K ++ E K+ DEAE++ E+ ES
Sbjct: 353 KLKDAE---KAAFDEAEKKNEEEES 374
>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
similarity to calnexin homolog 1, Arabidopsis thaliana,
EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
calreticulin family
Length = 532
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT-DDPAAAKERGEVIK 182
W +I NP+Y + + I A+G+++W ++ G +FD+ LI+ D+ A R K
Sbjct: 346 WKPRDIPNPDYF-ELERPNLEPIAAIGIEIWTMQDGILFDNILISKDEKVAETYRQSTWK 404
Query: 183 KRQEGEKKMKSEQDEAEREKEKAES 257
+ + EK+ + +DEA E + +S
Sbjct: 405 PKFDVEKEKQKAEDEAAGEADGLKS 429
>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
homolog 1, Arabidopsis thaliana, EMBL:AT08315
[SP|P29402]
Length = 530
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 6 WVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT-DDPAAAKERGEVIK 182
W +I NP+Y + + + I A+G+++W ++ G +FD+ LI D+ A R K
Sbjct: 344 WKPRDIPNPDYF-ELDRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWK 402
Query: 183 KRQEGEKKMKSEQDEA 230
+ + EK+ + ++EA
Sbjct: 403 PKFDVEKEKQKAEEEA 418
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 34.3 bits (75), Expect = 0.092
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +3
Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
KE+ E+ K+++E EKK++ + E E+EKEK
Sbjct: 474 KEKDEMAKEKEEVEKKLEGQVREEEKEKEK 503
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 156 AKERGEVIKKRQEGEKKMKSEQDEAEREKEKAES 257
A+ + E+ K+RQE E++ K E++E E+E+E+ S
Sbjct: 124 AEMKREMDKRRQEDEERDKREREEREKERERDNS 157
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
KER EV +KR+E +++ + E++ +RE+E+
Sbjct: 540 KEREEVERKRREEQERKRREEEARKREEER 569
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 156 AKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
AK R E KKR+E ++ + ++E E+E+E A+
Sbjct: 499 AKRREEERKKREEEAEQARKREEEREKEEEMAK 531
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 141 DDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKE 245
++ A +E K+R+E E+K + EQ+ RE+E
Sbjct: 527 EEMAKKREEERQRKEREEVERKRREEQERKRREEE 561
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 141 DDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
++ A +E+ K+R+E E+K++ EQ E +RE+E A+
Sbjct: 573 EEMAKRREQERQRKEREEVERKIREEQ-ERKREEEMAK 609
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 150 AAAKERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
AA K +K+ + +K K+E EAE+EKEK
Sbjct: 113 AAEKNEEAAVKENMDVDKDGKTENAEAEKEKEK 145
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
K+ E KK++E +KK K ++ + E EK+K E
Sbjct: 187 KKEEEDKKKKEEEDKKKKEDEKKKEEEKKKEE 218
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 180 KKRQEGEKKMKSEQDEAEREKEK 248
KK++E +KK K E+D+ ++E EK
Sbjct: 186 KKKEEEDKKKKEEEDKKKKEDEK 208
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
K++ E KK++E EKK + E+ + E K+K
Sbjct: 194 KKKEEEDKKKKEDEKKKEEEKKKEEENKKK 223
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +3
Query: 42 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQEGEKKMKSEQ 221
P N++ + + ++ T + F + +A +E+ + +KR++ K+ KSE+
Sbjct: 251 PSVNVFNAQPLEKSSRNAKHIRLDTDDETFDAYHNKSAEEEQSKEDRKRKKSSKRNKSEE 310
Query: 222 DEAEREKEKAE 254
+E E K++
Sbjct: 311 EEVNNEDHKSK 321
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 153 AAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAESL 260
A + GE IK+ E KK K QD+A ++ESL
Sbjct: 664 AVSDSGEDIKEDSERNKKYKGSQDKAVTNNLESESL 699
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 180 KKRQEGEKKMKSEQDEAEREKEK 248
KK++E E+KMK +++E +E EK
Sbjct: 167 KKKKEEEEKMKKKEEEETKESEK 189
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 180 KKRQEGEKKMKSEQDEAEREKEKAE 254
K+ E K++K +QDE+E+E+++ E
Sbjct: 296 KEETESRKRIKKQQDESEKEQKRRE 320
>At3g27570.1 68416.m03445 expressed protein
Length = 379
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 165 RGEVIKKRQEGEKKMKSEQDEAEREKE 245
+GE+I+ G+ +++ E +EAE+E E
Sbjct: 266 KGEIIQNLSRGQMRLRPEGEEAEKEDE 292
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 153 AAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
A KE ++ K + EKK K+E+DE ++EK KA+
Sbjct: 476 AEKEAKKMKKAEEAEEKKKKTEEDE-KKEKVKAK 508
>At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 600
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 114 TIFDDFLITDDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
++FD P +K ++ KK++E ++ +E + E E E E
Sbjct: 515 SLFDTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENEDEDEE 561
>At2g32360.1 68415.m03955 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 175
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 162 ERGEVIKKRQEGEKKMKSEQDEAEREKEK 248
E + K +E ++ +K E+DE E+EKEK
Sbjct: 124 EEEDQAMKDEEEDRDVKVEEDEEEKEKEK 152
>At1g76780.1 68414.m08935 expressed protein ; expression supported
by MPSS
Length = 1871
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 180 KKRQEGEKKMKSEQDEAEREKEK 248
KKR E EK++K EAE KEK
Sbjct: 731 KKRTEAEKRIKDRAREAEEIKEK 753
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 141 DDPAAAKERGEVIKKRQEGEKKMKSEQDEAE-REKEK 248
D+ A +E + KK+Q + + KSE++E E +E+EK
Sbjct: 107 DEVIAEEEEPKKKKKKQRKDTEAKSEEEEVEDKEEEK 143
>At4g12740.1 68417.m02001 adenine-DNA glycosylase-related /
MYH-related similar to MYH (GI:18845094) [Rattus
norvegicus]; similar to adenine-DNA glycosylase
(GI:12656850) [Mus musculus]; contains TIGRFAM profile
TIGR01084: A/G-specific adenine glycosylase (hits below
the trusted cutoff)
Length = 630
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 162 ERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
ER + +E E++ K+E+ EAE +KE+AE
Sbjct: 64 EREAEREAEREAEEEEKAEEAEAEADKEEAE 94
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 138 TDDPAAAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
+DD + +G++I K E E++ E E E EKA+
Sbjct: 203 SDDEGNGRSKGKMIDKAGEDERQKGKRAAELEMELEKAK 241
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 159 KERGEVIKKRQEGEKKMKSEQDEAEREKEKAE 254
+ER V+K++ + E K++ EQ+E ++E EKA+
Sbjct: 168 RERALVLKEK-DFEAKLQHEQEERKKEVEKAK 198
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 42 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE---RGEVIKKRQEGEKKMK 212
P +Y +D+ G + K+ D L+ + A ++E + + KK++ E+K +
Sbjct: 413 PKIEVYNKDKKMGSGGLITPAKTYNTAADSLLGETSAKSEEPSKKKDKKKKKKVEEEKPE 472
Query: 213 SEQDEAEREKEKAES 257
E+ +++K+KAE+
Sbjct: 473 EEEPSEKKKKKKAEA 487
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 153 AAKERGEVIKKRQEGEKKMKSEQDEAEREKEKAESL 260
A+K+ + +KK EK++ QDE EKEK ++L
Sbjct: 490 ASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKAL 525
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,710
Number of Sequences: 28952
Number of extensions: 278285
Number of successful extensions: 1197
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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