Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1074
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +3

Query: 156 CLFYYVLLRT*YLCTYMMHSSLLQ*TIKFIY 248
           C++Y+V+     LC Y  + + +  T+  ++
Sbjct: 132 CIYYFVVPLFFLLCIYYFYCAFIIFTVHLLF 162


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 254 TRNVIQLK*TTRHEPTKH 307
           TR++IQ +  TRH  T H
Sbjct: 270 TRHLIQRRTHTRHTTTSH 287


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 54  SSNAFPLEGCGSLRNYTETLEPVSQGGWR 140
           + N+    G   +  Y E +E   +GGW+
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWK 312


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 237 LLFIVTKRNASYM 199
           L+F+ TKRNA ++
Sbjct: 413 LIFVETKRNADFL 425


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 373 ILSGWLSYCVFNSDCLHYVSNIINQRKRF 459
           I++ W++  V +S   H+++ +I   +RF
Sbjct: 89  IVTVWMTGAVKHSKIAHFLNKMIRLDERF 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,914
Number of Sequences: 336
Number of extensions: 4047
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)