Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1074
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   2.1  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   6.4  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 87  SLRNYTETLEPVSQGGWRHLRCRCLFYYVLLR 182
           SL  Y       S  GW HL+C C++   +LR
Sbjct: 283 SLLRYASIAFSESFQGWIHLKCLCVYVESILR 314


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 48  RRSSNAFPLEGCGSLRNYTETLEPVSQGGWRHLRCRCLFY 167
           R++  AF  E    ++ +    +P  Q GW  +  RCL+Y
Sbjct: 132 RKNVMAFDYE---QVKKFVSVDQPTFQWGWLCVNTRCLYY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,155
Number of Sequences: 5004
Number of extensions: 56260
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)