Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1074
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561...    30   2.2  

>07_01_0737 +
           5614552-5616196,5617425-5617600,5617811-5617930,
           5618589-5618669,5618769-5618804,5618872-5618922,
           5618923-5618988,5620755-5620976,5622147-5622308,
           5622321-5622491
          Length = 909

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 158 SILLRFITYIVFMHIYDAFLFVTIN 232
           S  L F+ YI F H Y AFLF+ ++
Sbjct: 748 STSLTFLVYIFFAHGYSAFLFILVH 772


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,699
Number of Sequences: 37544
Number of extensions: 292386
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)