Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1074
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical p...    32   0.48 
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82072-2|CAB04921.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81029-8|CAB02702.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical
           protein T19B10.10 protein.
          Length = 303

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 343 LFAKSLYTGC-ILSGWLSYCVFNSDCLHYVSNIINQ 447
           +F   LYT   ++ GW +  V N  C+H V NI NQ
Sbjct: 204 VFKSILYTVIFVILGWCTVTVVNIGCIHLVENIENQ 239


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 317 CFFLYEVVSFSQNHYIQDVFYLDGY 391
           C  L  + S ++N +IQ ++Y+DGY
Sbjct: 271 CANLVSIHSANENRFIQTIYYVDGY 295


>Z82072-2|CAB04921.1|  329|Caenorhabditis elegans Hypothetical
           protein W05H12.2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 372 YFIWMVIVLCF*FRLLTLCKQYYKSKKTIFCYLHYRL*VKRILYT*YTTRCF 527
           YF    I     FR L LC Q +    TI  + H    +  ++Y  YTT  F
Sbjct: 5   YFFQKHIFRAIFFRKLLLCHQQHHDTSTIDMFKHLETIIIFLIYPIYTTLDF 56


>Z81029-8|CAB02702.1|  329|Caenorhabditis elegans Hypothetical
           protein W05H12.2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 372 YFIWMVIVLCF*FRLLTLCKQYYKSKKTIFCYLHYRL*VKRILYT*YTTRCF 527
           YF    I     FR L LC Q +    TI  + H    +  ++Y  YTT  F
Sbjct: 5   YFFQKHIFRAIFFRKLLLCHQQHHDTSTIDMFKHLETIIIFLIYPIYTTLDF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,516
Number of Sequences: 27780
Number of extensions: 314440
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)