Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1074
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.98 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 258 RVCDK*ILLFIVTKRNASYMCINTMYVIKRNKIDIYNVNAAT 133
           +V  K  +LF+    N+   C+N   V++R   D+   N  T
Sbjct: 312 KVVSKNGVLFLGLVGNSGIACVNEHQVLQRESFDVVAQNEET 353


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 358 LYTGCILSGWLSYCVFNSDCLHYVSNII 441
           +Y G  +SG  +  V+N+D +   SN+I
Sbjct: 164 IYGGGFMSGTATLDVYNADIMAATSNVI 191


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 358 LYTGCILSGWLSYCVFNSDCLHYVSNII 441
           +Y G  +SG  +  V+N+D +   SN+I
Sbjct: 164 IYGGGFMSGTATLDVYNADIMAATSNVI 191


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 232 VYCNKEECIIYVHKYYVRN 176
           VYC  ++C++ +   Y RN
Sbjct: 104 VYCKCDDCLLGIVDDYQRN 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,295
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)