Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1072
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 31 0.14
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.76
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 4.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 4.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 4.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 7.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.1
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 7.1
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 9.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 9.4
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.4
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 438 SGCGRCRVWSMFVRYVRFSELVFYIMRPQKLYIF 539
+GCG+ VW +VR+V F E LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 621 ARKIRGRPENAGPDPVRNVRRFSRV 547
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 765 QTREGHRNALF*LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAG 586
Q RE +R + + L P V+ T+E ++ H P R A P+ A
Sbjct: 463 QVREVYRKSFWKLSEYFPSVQEELTNTLEPS---VLKQLHLANPNRQAASFNFSGPKRAP 519
Query: 585 PDPVRNVRRFSR 550
P+ N+R FS+
Sbjct: 520 IRPLSNLRSFSK 531
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 635 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKY*LAKTNITHE 471
+ D +LG + A + +V + S+ D +E H+KY+Q + ++ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 699 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 553
SS+++ E S + +KP+R TA K + + ++ GP+ R + F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 475 TNIDQTRHRPHPLPVQTRHAPV 410
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 363 FPYLHYSID*RLFTLETCCGYGYEPARHL 277
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 264 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 684 RSAQNWHGQGESDCLIKTKHCDGPRGFDA 770
R N G+ ++DCLI C +G D+
Sbjct: 25 RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -1
Query: 445 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 281
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 280 -SPRTSLT*ISRSAESIRTP 224
SP+ + I + +SI TP
Sbjct: 314 VSPKYT---IQQYVQSIGTP 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,785
Number of Sequences: 5004
Number of extensions: 73223
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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