Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1070
(767 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 33 1.1
AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple ... 31 4.5
AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2... 31 4.5
AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1... 31 4.5
AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein. 31 4.5
X80497-1|CAA56662.1| 1235|Homo sapiens phosphorylase kinase prot... 30 7.9
D38616-1|BAA07606.1| 1235|Homo sapiens phosphorylase kinase alph... 30 7.9
BC014036-1|AAH14036.1| 1235|Homo sapiens phosphorylase kinase, a... 30 7.9
AL732509-6|CAI41680.1| 1235|Homo sapiens phosphorylase kinase, a... 30 7.9
AL096700-4|CAB86408.2| 1235|Homo sapiens phosphorylase kinase, a... 30 7.9
AF044572-1|AAD32846.1| 1235|Homo sapiens phosphorylase kinase al... 30 7.9
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 601 YFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 744
+ ++ P S F+ + PS+ + + SPES P SPLPVT ++ +
Sbjct: 5621 WMTTPPVEETSSGFSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668
>AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple
domains 3 protein.
Length = 3501
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 597 SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 734
SL T R W P+ CG RF G SG + P +P DN+
Sbjct: 1250 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1297
>AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2
protein.
Length = 3667
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 597 SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 734
SL T R W P+ CG RF G SG + P +P DN+
Sbjct: 1351 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1398
>AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1
protein.
Length = 3707
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 597 SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 734
SL T R W P+ CG RF G SG + P +P DN+
Sbjct: 1391 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1438
>AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.
Length = 2977
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 597 SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 734
SL T R W P+ CG RF G SG + P +P DN+
Sbjct: 731 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 778
>X80497-1|CAA56662.1| 1235|Homo sapiens phosphorylase kinase
protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
>D38616-1|BAA07606.1| 1235|Homo sapiens phosphorylase kinase alpha
subunit protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
>BC014036-1|AAH14036.1| 1235|Homo sapiens phosphorylase kinase,
alpha 2 (liver) protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
>AL732509-6|CAI41680.1| 1235|Homo sapiens phosphorylase kinase,
alpha 2 (liver) protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
>AL096700-4|CAB86408.2| 1235|Homo sapiens phosphorylase kinase,
alpha 2 (liver) protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
>AF044572-1|AAD32846.1| 1235|Homo sapiens phosphorylase kinase alpha
subunit protein.
Length = 1235
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHK 441
LN+ + R +LRK+V + A+ACTD +H+
Sbjct: 816 LNQEWGLIRYISGLLRKKVEVLAEACTDLLSHQ 848
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,851,596
Number of Sequences: 237096
Number of extensions: 2471221
Number of successful extensions: 6325
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6325
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -