Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1067
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.9  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 617 SSLKNHYFHCFITYSVGRK 561
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 542 YYRPRTASAQPSK 580
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 475 TATSVSATSPLSRLERNTVRPPILSTAHRFRPTE 576
           TA+S S  SP    E  +VRP  L       PTE
Sbjct: 209 TASSASNYSPSQSPEPESVRPLSLVVRRCEEPTE 242


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 480 DERFRHVTTLTLGT 521
           D RFRH+T +T+ T
Sbjct: 352 DVRFRHITEITILT 365


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 392 ALFFDRCTAPVKLPAWQC 445
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 392 ALFFDRCTAPVKLPAWQC 445
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 210 HKPVIPVVTFLAPLAKTLYTRGSIGRAFAVPMR 308
           H+P+ P VT    L+    T     RA   PM+
Sbjct: 239 HQPIYPAVTATVQLSTCTRTTLKNNRASPYPMQ 271


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 426 NSPPGSVLEPDHAGVLNGDERFRHVTTLTLG 518
           N  PG +  P+H  V       R+ T  T G
Sbjct: 310 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 340


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 426 NSPPGSVLEPDHAGVLNGDERFRHVTTLTLG 518
           N  PG +  P+H  V       R+ T  T G
Sbjct: 258 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 288


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 426 NSPPGSVLEPDHAGVLNGDERFRHVTTLTLG 518
           N  PG +  P+H  V       R+ T  T G
Sbjct: 441 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,228
Number of Sequences: 336
Number of extensions: 4031
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)