Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1067
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549... 30 2.5
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046... 30 2.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.3
03_05_0183 - 21681673-21682524 29 4.3
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.5
01_03_0064 + 12159036-12159177,12159383-12159538,12159592-12159605 28 7.5
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.9
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.9
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 28 9.9
03_04_0006 + 16257288-16259522 28 9.9
>10_08_0788 +
20553587-20553726,20554131-20554196,20554695-20554926,
20555033-20555237,20555335-20555441
Length = 249
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -2
Query: 365 DRNLAWSKRAKAGLIQMFSTHRDCESTAYRSSSIKS---FSKRCQKSYHRDNWLVAAK 201
+R L W + A +++ FSTH Y I C KSYH N+++ +K
Sbjct: 125 ERGLEWMR---AEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK 179
>01_03_0071 +
12203227-12203368,12203551-12203703,12204622-12204683,
12204749-12204830,12206029-12206126,12206240-12206657,
12206793-12206915,12207159-12207178
Length = 365
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 414 PPQSNS---PPGSVLEPDHAGVLNGDERFRHVTTLTLGTKHRA 533
PP + S PP +VL H V+ GDE + L LG RA
Sbjct: 6 PPHAGSGGPPPPAVLALPHGMVVVGDEAVQRAVVLRLGVNFRA 48
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 622 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 747
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 207 SQAFIATLLFDPSMSALPIIAKQNSPS 127
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 493 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 404
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 414 PPQSNSPPGSVLEPDHAGVLNGDE 485
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_03_0064 + 12159036-12159177,12159383-12159538,12159592-12159605
Length = 103
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 432 PPGSVLEPDHAGVLNGDERFRHVTTLTLGTKHRA 533
PP +VL H V+ GDE + L LG RA
Sbjct: 15 PPPAVLALPHGMVVVGDEAVQRAVVLRLGVNFRA 48
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 679 ESSSTGSSFPADSPKPVPLAVVSLDSR 759
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +1
Query: 649 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 756
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 420 QSNSPPGSVLEPDHAGVLNGDERFRHVTTLTLGTKHRAPADI 545
Q S PG + +P H G +NG +T RA +DI
Sbjct: 29 QKASVPGPLPDPAHTGPINGATVIERARGVTCPVASRAKSDI 70
>03_04_0006 + 16257288-16259522
Length = 744
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = -2
Query: 539 GGRTVFRSKRESGDVAETLVAV*NSRVIRFEDTARRGV*LGRYICQRITQVS*GQLSEDR 360
GGR VFRS R+ G + + ED A +G + ++T+++ G + D
Sbjct: 505 GGRLVFRSTRDGGGGGRR-----HKNLYVMEDAA-----VGEFGTSKVTRLTSGAWT-DT 553
Query: 359 NLAWSKRAKAGLIQMFSTHRDCESTA 282
+ +WS R + I +FS+ RD + A
Sbjct: 554 HCSWSPREGSDWI-VFSSTRDKPAAA 578
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,616,572
Number of Sequences: 37544
Number of extensions: 507696
Number of successful extensions: 1643
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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