Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1067
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.89 
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.89 
At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    31   1.2  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    30   1.5  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.6  
At5g52870.1 68418.m06562 expressed protein similar to unknown pr...    29   4.7  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    28   6.2  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   8.3  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    28   8.3  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 513 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 659
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 219 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 112
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 797 TRMNGLT-RFPLSYLLSSETTAKGTGLGESAGKEDP 693
           T  N LT RFP  +L S+++++K  G GE+    DP
Sbjct: 36  TENNNLTLRFPFGFLFSNQSSSKHGGGGENGFSADP 71


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 344 KRAKAGLIQMFSTHRDCESTAYRSSSIKSFSKRCQ---KSYHRDNWL 213
           KR K G++Q F    D     +  S IK+FS +C+    S H D W+
Sbjct: 58  KREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWI 104


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 643 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 753
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g52870.1 68418.m06562 expressed protein similar to unknown
           protein (gb|AAF24565.1)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 380 GQLSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSSSIKSFSKRCQKSYH 228
           G  S  R L  S+ A A +  M   +R  ES   +   I+S    C+KS+H
Sbjct: 216 GMRSVRRQLGKSRSASAAIGGMSPANRIDESLQVQQDGIQSAILHCKKSFH 266


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 374 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSSSIK 261
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 549 DRAPLPPNRVSNETMKVVVFQRRSRET 629
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 398 FFDRCTAPVKLPAWQCPRTGSRGSFKRRRAF--PPRHHSHAWNETPCARRYYRPRTASAQ 571
           F DR  +P +      PR G R S  R R +  PP     + + +P  RRY + R+ S  
Sbjct: 135 FQDRRRSPPRYSRSPPPRRGRR-SRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRS 193

Query: 572 P 574
           P
Sbjct: 194 P 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,974
Number of Sequences: 28952
Number of extensions: 379222
Number of successful extensions: 1098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)