Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1066
         (792 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p pro...    30   3.2  
AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA...    30   3.2  
AY061451-1|AAL28999.1|  249|Drosophila melanogaster LD38807p pro...    29   7.3  

>AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p
           protein.
          Length = 1517

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 673 VPPQSNSPPGSVLEPDHAG--VLNGDERFRHVTTLHAWNET----PCARRYYRPRTASAQ 512
           +PP   + PG  L+PD  G  +   +   +H+   +A   T    P    Y+ P+ A+ Q
Sbjct: 222 LPPPDGANPGLQLQPDQIGQQLAPPEAHMQHLQQYYAAPPTYAYGPYPSPYFTPQHANVQ 281

Query: 511 PVSNET 494
           P  N T
Sbjct: 282 PPPNAT 287


>AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA
           protein.
          Length = 1517

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 673 VPPQSNSPPGSVLEPDHAG--VLNGDERFRHVTTLHAWNET----PCARRYYRPRTASAQ 512
           +PP   + PG  L+PD  G  +   +   +H+   +A   T    P    Y+ P+ A+ Q
Sbjct: 222 LPPPDGANPGLQLQPDQIGQQLAPPEAHMQHLQQYYAAPPTYAYGPYPSPYFTPQHANVQ 281

Query: 511 PVSNET 494
           P  N T
Sbjct: 282 PPPNAT 287


>AY061451-1|AAL28999.1|  249|Drosophila melanogaster LD38807p
           protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 466 SRETISHLCYTSHVSL---QCQTRVKLNRVFFPR*FSQARSLGC 344
           S+ TI   CY  ++S    QCQ R+   +VFF    S A    C
Sbjct: 14  SKRTIFETCYMKNISFLKTQCQARILFCKVFFAVHSSNANVPSC 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,598,941
Number of Sequences: 53049
Number of extensions: 842661
Number of successful extensions: 2571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2571
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)