Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1064
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.39 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.68 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   1.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   8.4  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 667 EVSWHCYDCIFHTCVQVCFSSFLHLYQHKCTN 572
           ++ +  +  IF   ++ CFS   ++Y  KC N
Sbjct: 143 KIRYSAFGMIFVALLEHCFSMLNYVYSSKCEN 174


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 699 CIFCGLTLESLK*AGTVMTAFFTLVFKYASAVSFIFINTNAPI 571
           C F  + L  L   G ++   F ++ K  +    +FI  +API
Sbjct: 55  CYFLRMVLIDLLIVGCILKHIFNILMKNVTLNDVVFIFCSAPI 97


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = +1

Query: 298 PRWWKTVKGLGR----LPPMW-PSRKRASVWS 378
           P +WK + G G+    LPP   P  K+ S W+
Sbjct: 109 PYFWKMLTGFGKIEQVLPPHHAPEEKKRSFWA 140


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 688 TKDAGQISGLNVLRVINEPTAAASLRYGQDRR 783
           TKDAG +S   +  ++N+P  A + +  Q +R
Sbjct: 330 TKDAGLLSYPEICTLLNDPQNAKTQKAFQVKR 361


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 601 LHLYQHKCTNLARRVYFAISTLHPGVAI 518
           LH++  KC  LAR     ++ ++ G+ I
Sbjct: 479 LHIWTPKCERLARTEKLFVTPMYEGLLI 506


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 601 LHLYQHKCTNLARRVYFAISTLHPGVAI 518
           LH++  KC  LAR     ++ ++ G+ I
Sbjct: 479 LHIWTPKCERLARTEKLFVTPMYEGLLI 506


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 601 LHLYQHKCTNLARRVYFAISTLHPGVAI 518
           LH++  KC  LAR     ++ ++ G+ I
Sbjct: 479 LHIWTPKCERLARTEKLFVTPMYEGLLI 506


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 601 LHLYQHKCTNLARRVYFAISTLHPGVAI 518
           LH++  KC  LAR     ++ ++ G+ I
Sbjct: 479 LHIWTPKCERLARTEKLFVTPMYEGLLI 506


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 294 TPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVTNSXNTF 425
           T  VVE S     TP  +    +G  +  +P  RQ + N    F
Sbjct: 39  TGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLVF 82


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 619 VCFSSFLHLYQHKCTNLARRVYFAIS 542
           + F  F   Y HK T L   VY+ IS
Sbjct: 300 IIFQVFESFYLHKATTL-ETVYYFIS 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,867
Number of Sequences: 336
Number of extensions: 4509
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)