Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1064
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 127 YTSLNLIRCTLNLSAECRVAFNIFITY*NTILFYFQAFN 11
           YT+L L+        + RVA    +T  +T+L +F A N
Sbjct: 143 YTNLGLVNEQGQTWHDLRVALTSELTAASTVLGFFPALN 181


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 649 YDCIFHTCVQVCFSSFLHLYQHKCTN 572
           Y C+  + +     S  ++YQ++C N
Sbjct: 24  YSCVNKSMLNSHLKSHSNVYQYRCAN 49


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 293 LALHDGNARVCRARSIPMTAPRTPSDL 213
           L +H G      AR +  TA  TP DL
Sbjct: 258 LRIHRGGGTNTDARHLFRTASSTPEDL 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,642
Number of Sequences: 438
Number of extensions: 4777
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)