Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1062
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.2  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   2.2  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    23   2.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 88  RCFCCNGRNCCWDPT--EELE--GDCCKGCGDDAPDTKDLEGV 204
           R  C + +N C +PT  E +   G CCK C  D  D+  ++ +
Sbjct: 79  RVQCRSIKNECPEPTCDEPVHRPGRCCKTCPGDLYDSDIIQDI 121



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 91  CFCCNGRNCCW 123
           CFC NG N C+
Sbjct: 696 CFCENGNNKCF 706



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 91  CFCCNGRNCCW 123
           C C NG+  CW
Sbjct: 876 CKCENGKPTCW 886


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 139 ILLSDPNNSSFRCNRN 92
           I+LSDPN +  + N N
Sbjct: 142 IILSDPNTNKLKLNTN 157


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 113 TVVGIRQKNWKEIVVKD 163
           +V+  RQ+N+KEIVV +
Sbjct: 254 SVIAERQENFKEIVVPE 270


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 113 TVVGIRQKNWKEIVVKD 163
           +V+  RQ+N+KEIVV +
Sbjct: 254 SVIAERQENFKEIVVPE 270


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 85  ERCFCCNGRNCCWDPTEE 138
           ER   CNG   C D ++E
Sbjct: 131 ERGLFCNGEKDCSDGSDE 148


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 103 NGRNCCWDPTEELEGDCCK 159
           NG NC  D   E + + CK
Sbjct: 408 NGTNCEIDTINECDSNPCK 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,471
Number of Sequences: 336
Number of extensions: 1521
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)