Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1062
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   1.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   3.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   7.0  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   9.3  

>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 358 SSVLPDLLSQAGQPTTPPRLDKSTSEEYRQAIAGGRPYPTTTITRHLP 215
           SS+ PDL  Q   PT         S +Y Q IA G    TT + +++P
Sbjct: 559 SSLNPDLNLQRYTPTVEKHASDRNSVDYAQ-IASGIDTRTTVMIKNIP 605


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -2

Query: 316 TTPPRL-DKSTSEEYRQAIAG---GRPYPTTTITRHLPLCNPRLPNLSYRVRHRRILYNN 149
           +TP +L D ST  +  + ++     +P P++T +R   + NP LP L+  V   +++ N 
Sbjct: 180 STPIQLYDPSTQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSLP-LNPSVLQGQVMNNP 238

Query: 148 LLP 140
            +P
Sbjct: 239 TIP 241


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 202 RLPNLSYRVRHRRILYNN 149
           R+ NLS ++ HR ILYN+
Sbjct: 165 RISNLSSKILHRLILYNS 182


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 505 ECAPTRPLPPTPDDEDARTDAYADAHADRTLV 410
           E APT+   P P + + + D   D  A R ++
Sbjct: 413 ESAPTQHKQPAPSENENKADQEIDIEARRQII 444


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 250 GVHQLWLAYTPRWLIC 297
           G+++L L  T RW+IC
Sbjct: 236 GIYELALGKTKRWIIC 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,671
Number of Sequences: 5004
Number of extensions: 24304
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)