Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1062
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0173 + 20891526-20891957 31 0.76
05_04_0137 + 18343106-18344686 31 0.76
05_04_0300 - 19969066-19969535,19971216-19972686 29 2.3
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 29 3.1
07_03_1338 - 25877235-25877738 28 5.4
04_03_0062 - 10581175-10581879 28 5.4
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 27 7.1
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 27 9.4
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085... 27 9.4
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 27 9.4
>11_06_0173 + 20891526-20891957
Length = 143
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 253 RPYPTTTITRHLPLCNPRLPNLSYRVRHRRILYN 152
RPYP + RH+ PNL RV+ R L N
Sbjct: 91 RPYPLAHLDRHVQHLRGGQPNLGLRVKRRETLTN 124
>05_04_0137 + 18343106-18344686
Length = 526
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 259 GGRPYPTTTITRHLPLCNPRLPNLSYRVRHRRILYNNLLPILLSDPNNS 113
GGR P T H P NP L N +R+RR ++ +L + P+ +
Sbjct: 25 GGRSAPAKLTTAHRPHPNPVLGNTVEFIRNRRRFFDWYTDLLRASPSGA 73
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 181 RVRHRRILYNNLLPILLSDPNNSSFRCNRNSVRS*RL-DSAPA 56
++++RR++YN +P+ NN+ NR S S +L DS PA
Sbjct: 545 KLKNRRVMYNEAIPLTGKTANNTE-PFNRTSESSSKLPDSKPA 586
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLV 410
P P PP P D+D++ D D D+ L+
Sbjct: 417 PPPPPPPPPQDQDSQEDQDEDEEEDQELI 445
>07_03_1338 - 25877235-25877738
Length = 167
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 6 SAGSVPTGAACTSASGRAGAESKR*ERTLF 95
++G+ TGAA +ASG AGAE +T F
Sbjct: 71 ASGAAATGAAGDAASGSAGAEEAAAVKTSF 100
>04_03_0062 - 10581175-10581879
Length = 234
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 407 ETGPIKRR*RGQRRPHQLRTAGPAQSSRTADNTAASRQIN 288
ETGP ++R RGQ + + PA S AD+ + + N
Sbjct: 42 ETGPSRKRMRGQVKLAPRKRRAPASSDSDADDEEDAEEHN 81
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -2
Query: 325 GQPTTPPRLDKSTSEEY---RQAIAGGRPYPTTTITRHLPLCNPRLPN 191
GQPT PP + +E R A PYP +LP P+ N
Sbjct: 24 GQPTAPPPPPQQQQQEVAPNRYVFAAASPYPPQYPNPNLPQYYPQYGN 71
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 12 GSVPTGAACTSASGRAGAESKR 77
GS+P G C GR AESKR
Sbjct: 259 GSMPEGRKCLDCIGRPVAESKR 280
>10_08_0080 -
14707309-14707420,14707799-14707846,14708418-14708543,
14708586-14708743
Length = 147
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 374 QRRPHQLRTAGPAQSSRTADNTAASRQINQR 282
QRR ++ TAGP QS R + S + +R
Sbjct: 34 QRRRYRASTAGPPQSLRASSRRGGSPSLTRR 64
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLVM 407
P PLPPTP E AR A R L +
Sbjct: 727 PAAPLPPTPPPEAARPQGRRRRGAPRLLAL 756
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,878,753
Number of Sequences: 37544
Number of extensions: 197687
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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