Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1062
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15) 25 2.1
SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1) 29 3.1
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 28 4.1
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069) 28 4.1
SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_31967| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-39) 27 7.2
SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83) 27 7.2
SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6) 27 7.2
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 7.2
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
Length = 794
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 493 TRPLPPTPDDEDART 449
T+PLPPTP D +T
Sbjct: 508 TKPLPPTPVDNRMKT 522
Score = 23.0 bits (47), Expect(2) = 2.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 496 PTRPLPPTPD 467
P RPLPP PD
Sbjct: 492 PGRPLPPPPD 501
>SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)
Length = 291
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 86 NAVSVATEGTVVGIRQKNWKEIVVKDA 166
N+ V G VVG+ Q+NW++ VV A
Sbjct: 230 NSSDVMMTGHVVGVLQRNWRDYVVSFA 256
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 220 LPLCNPRLPNLSYRVRHRRILYN---NLLPILLSDPNNSSFRCN 98
L + R N Y V RR+L+N + P+ + P N +CN
Sbjct: 227 LAVMKVRFSNADYNVYTRRVLFNLPSHGFPLPMCSPGNHGIQCN 270
>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
Length = 657
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 88 RCFCCNGRNCCWDPTEELEGDCCKGCGDDAPDTKDL 195
RC NG + + CC CGD PD L
Sbjct: 611 RCGPANGEGAAQPGPDHSQHGCCPKCGDHFPDLDTL 646
>SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 159 FTTISFQFFCRIPTTVPSVATETAFVPNVWI 67
F+T S + F R+PT PSV TE V WI
Sbjct: 74 FSTFSKRLFYRLPTYFPSVPTEKNAV--AWI 102
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 398 PIKRR*RGQRRPHQLRTAGPAQSSRTADNTAASRQINQRGV 276
P+KR+ RG+ R + SS A N+ +++ RGV
Sbjct: 1211 PVKRKGRGKARKSPQKITSHGTSSTPAPNSTPAKRTRGRGV 1251
>SB_31967| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-39)
Length = 409
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +1
Query: 115 CCWDPTEELE--GDCCKGCGDDAPD 183
CCW P CC+ CG AP+
Sbjct: 297 CCWMPHTVFSFVSVCCRACGSAAPE 321
>SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83)
Length = 284
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 496 PTRPLPPTPDDEDARTDAYA 437
PT P PP P ++DA DA++
Sbjct: 227 PTTPPPPPPSEKDAYYDAFS 246
>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
Length = 450
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 198 FQIFRIGCVIAASFTTISFQFFCRIPTTVPSVATETAFV 82
F RI C+ F T FC I T+PS +E+ FV
Sbjct: 267 FNYCRIRCIATRVFKTRFVLVFCSISKTIPS-QSESRFV 304
>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 834
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 160 LYNNLLPILLSDPNNSSFRCNRNSVRS*RLDSAPALPEAEVQAAPVGTLPAER 2
L N +P S ++SS R + S +D P+LPE + G PA+R
Sbjct: 439 LSNYSVPEYTSSLHHSSIRTQNIGLNSLGIDPMPSLPEDCSNESMYGKSPADR 491
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = -2
Query: 283 EEYRQAIAGGRPYPTTTITRHLPLCNPRLPNLSYRVRHRRILYNNLLPILLSDPNNSSFR 104
+ Y+ I G + YP T R L +C+P+L + +Y + + ++ + + NNS+
Sbjct: 462 QNYKYPI-GSKMYPARTC-RDLHMCHPKLKSGNYWIDPNEGIPDDSIQVYCDFENNSTCI 519
Query: 103 CNRNSVR 83
N R
Sbjct: 520 FPNNQTR 526
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,256
Number of Sequences: 59808
Number of extensions: 224441
Number of successful extensions: 889
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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