Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1062
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   1.6  
Z81549-10|CAI79203.1|  128|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   2.7  
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 94   FCCNGRNCCWDPTEELEGDCCK 159
            F C+G++ C+D T+ELE  C K
Sbjct: 986  FICDGKSDCYDGTDELEKICKK 1007


>Z81549-10|CAI79203.1|  128|Caenorhabditis elegans Hypothetical
           protein F55C9.12 protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 361 TSSVLPDLLSQA-GQPTTPPRLDKSTSEEYRQAIAGGRPYPT 239
           T    P+  + A G P +PP+  KST E+Y +  A    +PT
Sbjct: 42  TPDTFPEAEAVATGAPQSPPKTTKSTREKYLEGKAEEALFPT 83


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 349 LPDLLSQAGQPTTPPRLDKSTSEEYRQAIAGGRPYP 242
           LPDL S+    TTP R     ++  RQA+  GRP P
Sbjct: 9   LPDLQSETSHVTTPHR----QNDLLRQAVTHGRPPP 40


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
 Frame = -2

Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLVMKXXXXXXXXXXXXXRTSSVLPDLLSQAGQP 317
           P R  P +P  E  RT      HADR +                 T++          Q 
Sbjct: 585 PARRRPQSPSPERQRT----SRHADRDITSYDEDSYRAVPPPRMPTATSFSSWSPPDKQS 640

Query: 316 TTPPRLDKSTSEEYRQAIAGGRPY-PTTTITRH 221
            TP     ST+ +YR     G  Y PT   T H
Sbjct: 641 YTPISPFVSTANKYRNEYTSGSSYRPTNMYTSH 673


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
 Frame = -2

Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLVMKXXXXXXXXXXXXXRTSSVLPDLLSQAGQP 317
           P R  P +P  E  RT      HADR +                 T++          Q 
Sbjct: 535 PARRRPQSPSPERQRT----SRHADRDITSYDEDSYRAVPPPRMPTATSFSSWSPPDKQS 590

Query: 316 TTPPRLDKSTSEEYRQAIAGGRPY-PTTTITRH 221
            TP     ST+ +YR     G  Y PT   T H
Sbjct: 591 YTPISPFVSTANKYRNEYTSGSSYRPTNMYTSH 623


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
 Frame = -2

Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLVMKXXXXXXXXXXXXXRTSSVLPDLLSQAGQP 317
           P R  P +P  E  RT      HADR +                 T++          Q 
Sbjct: 585 PARRRPQSPSPERQRT----SRHADRDITSYDEDSYRAVPPPRMPTATSFSSWSPPDKQS 640

Query: 316 TTPPRLDKSTSEEYRQAIAGGRPY-PTTTITRH 221
            TP     ST+ +YR     G  Y PT   T H
Sbjct: 641 YTPISPFVSTANKYRNEYTSGSSYRPTNMYTSH 673


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
 Frame = -2

Query: 496 PTRPLPPTPDDEDARTDAYADAHADRTLVMKXXXXXXXXXXXXXRTSSVLPDLLSQAGQP 317
           P R  P +P  E  RT      HADR +                 T++          Q 
Sbjct: 585 PARRRPQSPSPERQRT----SRHADRDITSYDEDSYRAVPPPRMPTATSFSSWSPPDKQS 640

Query: 316 TTPPRLDKSTSEEYRQAIAGGRPY-PTTTITRH 221
            TP     ST+ +YR     G  Y PT   T H
Sbjct: 641 YTPISPFVSTANKYRNEYTSGSSYRPTNMYTSH 673


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 214 LCNPRLPNLS----YRVRHRRILYNNLLPILLSDPNNSS 110
           +CNP +PNLS    Y++   R  Y+ +L +      NSS
Sbjct: 293 ICNPAIPNLSSNAQYKLEKGRSFYSEMLLVYCLQSLNSS 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,479,738
Number of Sequences: 27780
Number of extensions: 149979
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)