Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1062
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 1.5
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 1.5
At5g49440.1 68418.m06117 expressed protein 28 3.4
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 6.0
At3g11890.2 68416.m01458 expressed protein 27 6.0
At3g11890.1 68416.m01457 expressed protein 27 6.0
At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laev... 27 7.9
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 27 7.9
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 7.9
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 91 CFCCNGRNCCWDPTEELEGDCCKGCGDDAPDTKD 192
C CC G CC D E G + +D KD
Sbjct: 9 CVCCGGPGCCGDRGEGPVGGARQPAAEDVVTVKD 42
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 91 CFCCNGRNCCWDPTEELEGDCCKGCGDDAPDTKD 192
C CC G CC D E G + +D KD
Sbjct: 9 CVCCGGPGCCGDRGEGPVGGARQPAAEDVVTVKD 42
>At5g49440.1 68418.m06117 expressed protein
Length = 181
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 508 AECAPTRPLPPTPDDEDAR 452
A C TR +PPT D+E AR
Sbjct: 134 APCVTTRRIPPTRDEEQAR 152
>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 315
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 523 WAD*AAECAPTRPLPPTPDDEDARTDAYADAHAD 422
W + + C R L PT DD++ +TDA + D
Sbjct: 255 WLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDD 288
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 361 CGRRCPRYRRLIG 399
CGR+CP+ R+LIG
Sbjct: 755 CGRKCPKCRQLIG 767
>At3g11890.2 68416.m01458 expressed protein
Length = 527
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 496 PTRPLPPTPDDEDARTDAYADAH 428
P+ PLP TP + DA AD H
Sbjct: 84 PSLPLPETPQSQAELRDALADTH 106
>At3g11890.1 68416.m01457 expressed protein
Length = 500
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 496 PTRPLPPTPDDEDARTDAYADAH 428
P+ PLP TP + DA AD H
Sbjct: 84 PSLPLPETPQSQAELRDALADTH 106
>At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laevis,
EMBL:XLU66003
Length = 225
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 79 RNERCFCCNGRNCCWDPTEELEGDCCKGCG 168
R + NG W P EL+G CK CG
Sbjct: 71 RTNVSYSFNGEES-WQPLTELQGTKCKRCG 99
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 469 DDEDARTDAYADAHAD 422
DD+DA TDA +DA+AD
Sbjct: 566 DDDDADTDAASDANAD 581
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 469 DDEDARTDAYADAHAD 422
DD+DA TDA +DA+AD
Sbjct: 536 DDDDADTDAASDANAD 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,038,353
Number of Sequences: 28952
Number of extensions: 137483
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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