Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1061
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    31   0.17 
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    29   0.51 
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   2.1  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    27   2.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   3.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.3  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 85  ENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITKIQ 264
           +NES ++R     ++ FE  V  A +    E+L KL+    Q   +   PS+++    I 
Sbjct: 391 DNESDIDRAQLPSRENFEFNVNIAKL--QVETLHKLIDSAMQTEKVKKDPSLSQVFDGIS 448

Query: 265 NCFVQNNKSV 294
           N F   +K+V
Sbjct: 449 NSFNTLHKTV 458


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +1

Query: 40  SMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLI 219
           ++L  F++I+ +A  E + +      +  + ++++    ++VRA E L+ +   IK Y +
Sbjct: 27  TILSRFQDILDIAINEGKDKYT----VAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWL 82

Query: 220 LN----DFPSVN 243
            N     FP+V+
Sbjct: 83  TNSLSTSFPTVD 94


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 4   KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIE 123
           K+YT + KED   +L   E I K    ENE  LN  T +E
Sbjct: 98  KAYTAKTKEDFAYLLSQLETIFK----ENEI-LNEFTPVE 132


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103 NRMTQIEQ-DTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITKIQNCFVQ 279
           NR   I++ DTFE Q    +  R   +L K + D+K  + LND+  ++  + +  N F  
Sbjct: 61  NRHISIQKFDTFEHQCAFISSDRFVRTL-KRIYDLKLPVPLNDYEQISPYLLQKYNTFSS 119

Query: 280 NN 285
           +N
Sbjct: 120 SN 121


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 37  KSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYL 216
           +S++EN   +I LAK+ NE   + +      +FE QV +   + A   L K  SD+   +
Sbjct: 441 QSIVENMRAVINLAKLTNEI-CDSLYWNPSPSFESQVNSVRRIYARLELWK--SDLHSSV 497

Query: 217 ILND 228
           + ++
Sbjct: 498 VFDE 501


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 1    LKSYTTRLKED-VKSMLENFEEIIKLAKVENESQL---NRMTQIEQDTFEMQVRAANIVR 168
            +K Y   L    V ++++ F ++  ++K      L     M+  E  T+E  VRA   V 
Sbjct: 1136 MKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYLSVN 1195

Query: 169  AGESLMKLVSDIKQ 210
             G   M++V  +K+
Sbjct: 1196 DGRKAMEIVEQLKR 1209


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 506 KISLYCIIETSCSINTDLKI*IEVLI 583
           +I LY  I TSCSIN  LK  +  LI
Sbjct: 503 QIILYSSICTSCSINESLKTKLPKLI 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,827
Number of Sequences: 5004
Number of extensions: 41157
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)