Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1061
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330     52   6e-07
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047...    31   1.2  
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079...    30   2.2  
10_01_0181 - 2041502-2043013                                           28   6.6  

>08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330
          Length = 148

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 28/99 (28%), Positives = 53/99 (53%)
 Frame = +1

Query: 4   KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESL 183
           K+   +   DV S+++NF  +I +A+V +    N      Q+ F+M +R + +V + +SL
Sbjct: 24  KTLLQKADADVSSLVDNFAALINIARVNDPPVRNT-----QEAFQMDMRGSRMVHSADSL 78

Query: 184 MKLVSDIKQYLILNDFPSVNEAITKIQNCFVQNNKSVTR 300
           +KLVS++K+  I +   S+ E + +    F Q  +   R
Sbjct: 79  LKLVSELKRTAIFSGLASLTENVDRRIEIFSQQVEGTER 117


>03_05_0952 +
           29103879-29103983,29104103-29104600,29104693-29104794,
           29105552-29105898,29105967-29106153,29106242-29106417,
           29106976-29107065,29107066-29107322,29107593-29107687,
           29107801-29107920,29108111-29108230,29108410-29108508,
           29108588-29108689,29108884-29109111
          Length = 841

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +1

Query: 19  RLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVS 198
           R+KEDV+ ML   +EII  A + N  +  +   +EQ TF+  +   + +     + KL+ 
Sbjct: 540 RMKEDVEHMLPRKKEIIIYANMTNHQKEIQNHLVEQ-TFDEYLHEKSEIGMYPPVEKLLE 598

Query: 199 DIKQYLILN 225
              ++ +LN
Sbjct: 599 QCGKFQLLN 607


>09_04_0287 -
           16407324-16407551,16407647-16407748,16407824-16407922,
           16408213-16408332,16408513-16408632,16408740-16408834,
           16409109-16409365,16410134-16410309,16410401-16410587,
           16410656-16411002,16411722-16411823,16411917-16412414,
           16412520-16412624
          Length = 811

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +1

Query: 19  RLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVS 198
           R+KEDV+ ML   +EII  A + +  +  +   +EQ TF+  +   + +     + KL+ 
Sbjct: 510 RMKEDVEHMLPRKKEIIIYANMTDHQKQIQNHLVEQ-TFDQYLHEKSEIGLYPPVEKLLE 568

Query: 199 DIKQYLILN 225
              ++ +LN
Sbjct: 569 QCGKFQLLN 577


>10_01_0181 - 2041502-2043013
          Length = 503

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 24/87 (27%), Positives = 40/87 (45%)
 Frame = +1

Query: 16  TRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLV 195
           T +  +VKS LEN E ++   K E  S LN   +I ++ +   +   N +  G  + +  
Sbjct: 142 TIVSREVKSSLENLETVLDNLK-EFVSLLNGCERIFRNPYSTYLYIDNFM-FGRQVER-- 197

Query: 196 SDIKQYLILNDFPSVNEAITKIQNCFV 276
             I   L+L+D P +   +  I  C V
Sbjct: 198 QQIMSILMLDDHPKIPAVLPIIGGCRV 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,819,588
Number of Sequences: 37544
Number of extensions: 198099
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)