Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1061
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16902| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.31 
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     29   3.8  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      29   3.8  
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_36425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   6.5  
SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)                       28   6.7  
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 28   6.7  

>SB_16902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 45/68 (66%), Positives = 57/68 (83%)
 Frame = +1

Query: 55  FEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFP 234
           F +I  + +VE E+Q+ R+TQ  QD +E+ VRAANIVRAGESLMKLVSDIK++LILNDFP
Sbjct: 26  FFDIFGIHQVEEETQVARLTQSVQDQYEVNVRAANIVRAGESLMKLVSDIKEFLILNDFP 85

Query: 235 SVNEAITK 258
           SVNE+I +
Sbjct: 86  SVNESIAE 93


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 434 LVLYVLKINDHCKYQI-CLCCLPTIKISLYCIIETSCSI 547
           + +Y++ +N  C + + C CC P  +   YC+  + C+I
Sbjct: 794 ITIYII-VNHLCHFSVGCYCCRPFCRYLFYCLASSMCTI 831


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/61 (21%), Positives = 36/61 (59%)
 Frame = -2

Query: 200 SDTSFISDSPALTILAALTCISNVSCSICVILFN*DSFSTFANFMISSKFSNMLLTSSFN 21
           + +S+++ +  L+++  +T + N +  +C+ +F   S   F N++++S   + L+ + F+
Sbjct: 23  TQSSYVAQTVFLSVIFVITLLGNAT--VCLTVFLTSSLHAFTNYIVASLAVSDLMVALFS 80

Query: 20  L 18
           L
Sbjct: 81  L 81


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 285  QECDQKLMSLRDDIAADLYDLEDEY 359
            QE +QK+  LR++ +ADL +LE  +
Sbjct: 1051 QELEQKMQDLRENFSADLSELEQNF 1075


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +1

Query: 25  KEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDI 204
           ++     L N +E IK      E   +     +   FE +VR  N+V   E+LMKL+ DI
Sbjct: 306 RDTTAKALANIDEAIKNITTSKEIMYSVKEYNKAIAFE-EVRE-NLV--AENLMKLLGDI 361

Query: 205 KQYLILND-FPSVNEAITKIQNCFVQNNKS 291
           KQ +   D  P + + +T I N      KS
Sbjct: 362 KQVVDNTDPTPELVKMLTSILNGCRDGTKS 391


>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
 Frame = +1

Query: 19  RLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANI--------VRAG 174
           RL+  ++   E+  + ++  + E  S + R  Q+E D   +Q +A ++        + +G
Sbjct: 121 RLESQLRLQQEDSRKKLENMRQELNSIMRRQQQLETDNVGLQEKAGDLRSSLENLELLSG 180

Query: 175 ESLMKLVSDIKQYLILNDFPSV 240
           E  ++L S + + L L DF +V
Sbjct: 181 ERYLELKSTVPEQLNLKDFVAV 202


>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 37  KSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGE-SLMKLVSDIKQY 213
           K++LE  EE+ +  +   E    R+ Q+EQ+  E+++R   I  + E  + +L +DI  +
Sbjct: 86  KALLEKNEELSQKYEKLQEEFSQRVEQLEQEKHELKLRLERIDGSHELRVQELQADI--H 143

Query: 214 LILNDFPSVNEA 249
            + N+  SV  A
Sbjct: 144 ALRNELNSVKTA 155


>SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/70 (24%), Positives = 38/70 (54%)
 Frame = +1

Query: 19  RLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVS 198
           RLKED++ + +++E++ K A+V N+        I       + R  + V+    + +LVS
Sbjct: 193 RLKEDLEDLQDSYEQVTKNARVMND-------DIRSLRINWKFRQCSSVQWVSEIKELVS 245

Query: 199 DIKQYLILND 228
           ++++ L + +
Sbjct: 246 ELRRRLDMEE 255


>SB_36425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 175 ESLMKLVSDIKQYLILND-FPSVNEAITKIQNCFVQNNKSVTRN 303
           E+LMKL+ DIKQ L   D  P + EA   I+N  +   K ++ N
Sbjct: 12  ENLMKLLEDIKQVLDNADPTPELIEAANGIENYRLNMPKDISPN 55


>SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 24.2 bits (50), Expect(2) = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 316 RKDINFWSHSCCFVR 272
           R  I+ W H+CC++R
Sbjct: 114 RVAISRWLHACCYIR 128



 Score = 22.6 bits (46), Expect(2) = 6.5
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -3

Query: 298 WSHSCCFVRNNF 263
           W H+CC+++  +
Sbjct: 167 WLHACCYIQGGY 178


>SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)
          Length = 210

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 22  LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQD 129
           LKE  K  + N EE IK  K +  S   R++++EQD
Sbjct: 138 LKEQKKMEIINLEEQIKTFKEQAASLRVRLSEVEQD 173


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 22  LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQD 129
           LKE  K  + N EE IK  K +  S   R++++EQD
Sbjct: 38  LKEQKKMEIINLEEQIKTFKEQAASLRVRLSEVEQD 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,337
Number of Sequences: 59808
Number of extensions: 255265
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)