Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1061
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07950.1 68414.m00864 surfeit locus protein 5 family protein ...    61   8e-10
At1g16430.1 68414.m01965 surfeit locus protein 5 family protein ...    60   1e-09
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    31   1.0  
At3g09050.1 68416.m01064 expressed protein                             30   1.4  
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp...    29   3.1  
At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast...    29   4.1  
At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast...    29   4.1  
At2g05755.1 68415.m00619 integral membrane family protein contai...    28   7.2  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    27   9.6  
At2g01031.1 68415.m00006 hypothetical protein                          27   9.6  

>At1g07950.1 68414.m00864 surfeit locus protein 5 family protein /
           SURF5 family protein similar to Surfeit locus protein 5
           (SP:Q15528) {Homo sapiens}
          Length = 154

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 31/99 (31%), Positives = 61/99 (61%)
 Frame = +1

Query: 4   KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESL 183
           K+   R++ D+ S+++NF +I+ +++V +    N      Q+T+ M++RA+ +V+A +SL
Sbjct: 30  KALLQRVETDITSVVDNFTQIVNVSRVSDPPVKN-----SQETYMMEMRASRMVQAADSL 84

Query: 184 MKLVSDIKQYLILNDFPSVNEAITKIQNCFVQNNKSVTR 300
           +KLVS++KQ  I + F S+N+ + +    F Q  +   R
Sbjct: 85  LKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNR 123


>At1g16430.1 68414.m01965 surfeit locus protein 5 family protein /
           SURF5 family protein similar to Surfeit locus protein 5
           (surf5) (SP:Q62276) [Mus musculus]; similar to Surfeit
           locus protein 5 (SP:Q15528) [Homo sapiens]
          Length = 150

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 28/83 (33%), Positives = 54/83 (65%)
 Frame = +1

Query: 4   KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESL 183
           K+   R+  D+ S+++NF +I+ +A+V +    N      Q+ + M++RA+ +V+A +SL
Sbjct: 27  KALLQRVDTDITSVVDNFNQIVNVARVSDPPMKN-----SQEAYMMEMRASRLVQAADSL 81

Query: 184 MKLVSDIKQYLILNDFPSVNEAI 252
           +KLVS++KQ  I + F S+N+ +
Sbjct: 82  LKLVSELKQTAIFSGFASLNDHV 104


>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 234 ISQ*SHYQNSKLFRTK-QQECDQKLMSLRDDIAADLYDLEDE 356
           + Q  HYQ  K FRTK  +E  +K+M   + I   +  LED+
Sbjct: 189 VDQFHHYQPKKRFRTKFNEEQKEKMMEFAEKIGWRMTKLEDD 230


>At3g09050.1 68416.m01064 expressed protein 
          Length = 258

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 1   LKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQ 126
           L   +TR+ E+++S ++ FEE   L ++E E   N++ + E+
Sbjct: 110 LDEASTRILENIESKMQAFEESAGLNRLEIEENDNKLAEFEE 151


>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           contains weak similarity to Conserved oligomeric Golgi
           complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
          Length = 836

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +1

Query: 19  RLKEDVKSMLENFEEII-KLAKVENESQLNRMTQIEQDTFEMQVRAA-NIVRAGESLMKL 192
           RL++D  S+  +   I+ KL K E  S          D  + ++ AA   ++    L +L
Sbjct: 74  RLRDDAVSLRGSVAGILQKLKKAEGSSADCIAALARVDNVKQRMEAAYKTLQDAAGLTQL 133

Query: 193 VSDIKQYLILNDFPSVNEAITKIQNC 270
            S ++      D P   E +  ++NC
Sbjct: 134 SSTVEDVFASGDLPRAAETLASMRNC 159


>At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast /
           transaminase A (ASP5) (AAT1) nearly identical to
           SP|P46248 Aspartate aminotransferase, chloroplast
           precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
           thaliana}
          Length = 453

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 130 TFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITKI 261
           T E+Q    N+V+  E+LM    D K+YL +    + N+A  ++
Sbjct: 89  TEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAEL 132


>At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast /
           transaminase A (ASP5) (AAT1) nearly identical to
           SP|P46248 Aspartate aminotransferase, chloroplast
           precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
           thaliana}
          Length = 453

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 130 TFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITKI 261
           T E+Q    N+V+  E+LM    D K+YL +    + N+A  ++
Sbjct: 89  TEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAEL 132


>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 254 VMASLTDGKSLRIKYCLISDTSFISDSPALTILA--ALTCISNVSCSICVILFN*DSFST 81
           + +S+T G    I YCLI   +  S+ P +T+L+   + C +   C      F   +F T
Sbjct: 259 LFSSITGG----ITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDT 314

Query: 80  FANFMI 63
             + ++
Sbjct: 315 LVSMIV 320


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 25  KEDVKSMLENFEEIIKLAKVENESQLNRMTQI 120
           KED K   ENF   +KL  +E+     R+T +
Sbjct: 474 KEDYKKFWENFGRFLKLGCIEDTGNHKRITPL 505


>At2g01031.1 68415.m00006 hypothetical protein
          Length = 249

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  YTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLM 186
           Y    K  V   LE  E +I   K +    + R+ ++EQ    +++R+ +  +AG  L+
Sbjct: 172 YFRTKKRRVDFRLEELETLIAKLKKKRRRVVTRLDEVEQTIRALEIRSEDWEKAGLQLV 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,804
Number of Sequences: 28952
Number of extensions: 187605
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)