Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1060
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QRL6 Cluster: Hairy-related 12; n=2; Danio rerio|Rep:...    34   2.3  
UniRef50_A0J3U9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q0AC39 Cluster: TonB family protein; n=1; Alkalilimnico...    33   6.9  
UniRef50_Q18896 Cluster: Nuclear hormone receptor family protein...    33   6.9  
UniRef50_A6RUI7 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q4QRL6 Cluster: Hairy-related 12; n=2; Danio rerio|Rep:
           Hairy-related 12 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 155

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +3

Query: 138 RPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVFITTDTIKGRMRKHKRESRAIA 317
           R +I  CI       ++  H+    +K++  D+  M V      IK + +  +R+     
Sbjct: 34  RDRINTCIDQLKSLLEKEFHSHDPSTKLEKADILEMTVSFLKQQIKQQQQIPQRDFNEGY 93

Query: 318 AGLPRQD-HFNTLHTSSSDTYSLHSG 392
           +   R+  HF +LH+++ +   LHSG
Sbjct: 94  SHCWRESVHFLSLHSNAGELQHLHSG 119


>UniRef50_A0J3U9 Cluster: Putative uncharacterized protein; n=1;
           Shewanella woodyi ATCC 51908|Rep: Putative
           uncharacterized protein - Shewanella woodyi ATCC 51908
          Length = 233

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +3

Query: 204 HGDSKMDSRDLCAMMVF---ITTDTIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDT 374
           HG S  D +DL  MM+    I T      M K  RE     + +  QDH NTL  S+ D 
Sbjct: 42  HGTSDEDIKDLKHMMMRDWGIETREEYLNMLKWLREEGHNRSYMQMQDHLNTLSESAIDA 101

Query: 375 Y-SLHSGTQFRKHC 413
           Y   HS    R+ C
Sbjct: 102 YIDAHSHNVDRQSC 115


>UniRef50_Q0AC39 Cluster: TonB family protein; n=1; Alkalilimnicola
           ehrlichei MLHE-1|Rep: TonB family protein -
           Alkalilimnicola ehrlichei (strain MLHE-1)
          Length = 333

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 181 FVCPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPL 29
           +V  S+L+H  IFGL FA+VS+L            I  + A +E    AP+
Sbjct: 21  YVAASILLHVLIFGLFFANVSLLPQATEEHAGDGEIIEAFAVDEEVAMAPI 71


>UniRef50_Q18896 Cluster: Nuclear hormone receptor family protein
           137, isoform a; n=4; Caenorhabditis|Rep: Nuclear hormone
           receptor family protein 137, isoform a - Caenorhabditis
           elegans
          Length = 363

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 21/79 (26%), Positives = 41/79 (51%)
 Frame = -2

Query: 268 VSVVINTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTL 89
           +++ I  I ++  ++  ++ P    + +S      +IHA +F  +F  V ILD +HR + 
Sbjct: 203 IAIAIEAIESYFDKKKTVVMPDGTDVMQSLANSGSVIHA-VFTQMF--VCILDPLHRESF 259

Query: 88  NIFAIALSLASNEYTLRAP 32
            I  + L+L    +T+ AP
Sbjct: 260 TIDELVLTLQLLFFTIAAP 278


>UniRef50_A6RUI7 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1005

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 466 IGMPTCSIEQAEAVLNITLHFQL*RKGKSHLCSIICLHLLGVVRL 600
           + +PTCSI   ++ LN+ L+FQ    G+S  C +   + + +V++
Sbjct: 562 LNIPTCSIRSVQSYLNLALYFQ--STGESRTCWLCVGNAIRIVQM 604


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,414,670
Number of Sequences: 1657284
Number of extensions: 11883289
Number of successful extensions: 27427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27423
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)