Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1060
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    30   0.23 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.5  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   6.5  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.5  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 391 EHNLGNIVDQLCTSLQD-IKDHEDSVIGMPTCSIEQAEAVLNITLHFQL*RKGKSHLCSI 567
           EH +  ++ QL  S  D I D    V+ +    +EQAEA+++  +H      G    C +
Sbjct: 86  EHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQV 145

Query: 568 ICLHL 582
              HL
Sbjct: 146 AVKHL 150


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 262  QTLSRAGCVNT-RERAGR*LRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQ 438
            + + + G V+  RE++ + ++   V        L+ LI  + I +HN  N    L  ++ 
Sbjct: 2347 EEIDQGGTVSEHREKSVKPVKKIPVPNLLDRQGLYSLIRLIFISQHNGKNPYYDLIVNIS 2406

Query: 439  DIKDHEDSVIGMPTCSIEQA 498
            + K H   ++G+    +++A
Sbjct: 2407 ENKQHRADIVGLLLYILQEA 2426


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 166 LLIHAYIFGLLFASVS-ILDMMHRLTLNIFAIALSLASNEYTL-RAPLTSV 20
           +++     G+L  ++  +LD +H+L + ++    SL    Y++  APL S+
Sbjct: 380 IMLGGLFLGILAVAIHLVLDAVHKLPMQVYFFLYSLMIYGYSIGSAPLISL 430


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 445 LCPGD*YTADQQCFLNCV 392
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 331 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 423
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,511
Number of Sequences: 5004
Number of extensions: 51384
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)