Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1060
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043...    30   1.6  
05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332           29   3.8  
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415...    29   3.8  
01_05_0460 - 22442758-22442932,22443134-22443227,22443355-224435...    29   3.8  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    28   6.6  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   6.6  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    27   8.7  

>01_06_1083 -
           34403769-34403774,34403819-34403918,34404235-34404318,
           34404427-34404506,34404614-34404707,34404796-34404887,
           34405335-34405425,34405617-34405719,34405919-34406008,
           34406154-34406235,34406434-34406481,34406601-34406897,
           34406992-34407078,34408047-34408247,34408329-34408533,
           34409362-34410152
          Length = 816

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 359 SVECVEVILTWQ-ARSYRPALSLVFTHPALDSVCRYKHHHR 240
           SVE  +  LTWQ   +YRP    +F HP L   C     HR
Sbjct: 315 SVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHR 355


>05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332
          Length = 138

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 444 KRSRRFCHRYANVFYRTSRGCTQYYAAFPALKKGQESPLQYYLPP 578
           KR +RF H Y N  +  +  C+    A P  KK    P + + PP
Sbjct: 72  KRGKRFNHSYGNTCHLLTAVCSS--QARPRNKKKGTGPARLFAPP 114


>05_01_0498 +
           4152729-4152820,4153316-4153425,4153840-4153877,
           4154335-4154433,4154461-4157475
          Length = 1117

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 394 HNLGNIVDQL--CTSLQDIKDHEDSVIGMPTCSIEQAEAVLNITLH 525
           ++LG  +D L  CTSL+ I    +S+ G    +I++   ++N+ LH
Sbjct: 485 NDLGGSIDALLSCTSLKSIDVSNNSLTGEIPPAIDRLPGLVNLALH 530


>01_05_0460 -
           22442758-22442932,22443134-22443227,22443355-22443519,
           22444013-22444134,22445024-22445106,22445251-22445372,
           22445668-22445695
          Length = 262

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 267 TIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKH 410
           T +  M +   + RA++  + ++  F T+H S+ +T  +    +F KH
Sbjct: 181 TKESLMERLNTDIRAVSMSITKECRFFTVHGSADETIPVEDAYKFAKH 228


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 357 CGVC*SDLDVAGPQLSPCSLSCVYASC 277
           C +C  D+D+   QL PC   C Y  C
Sbjct: 11  CPLCAEDMDITDQQLKPC--KCGYEIC 35


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 357 CGVC*SDLDVAGPQLSPCSLSCVYASC 277
           C +C  D+D+   QL PC   C Y  C
Sbjct: 68  CPLCAEDMDITDQQLKPC--KCGYEIC 92


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 267  TIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDTYSLHSGT 395
            +++  +R+ +  S+   A  PR+ H  +LH+SSS   +L+ GT
Sbjct: 1513 SVRRELREKENRSKMRIAKAPRKQHQVSLHSSSSP--NLNKGT 1553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,842
Number of Sequences: 37544
Number of extensions: 333233
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)