Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1060
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32) 33 0.14
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09) 31 0.96
SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09) 30 1.3
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08) 30 1.3
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 2.9
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 28 5.1
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 6.7
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 27 8.9
SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15) 27 8.9
>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
Length = 382
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Frame = +1
Query: 328 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE--- 492
H+K HSTL + VC L ++ D C + D++ H +S + TC+++
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQGCA 310
Query: 493 -QAEAVLNITLHFQL*RKGKSHLCSIICLHLLG 588
A A+ + HF++ +G L C HL G
Sbjct: 311 FSARAMQTLKRHFKITHEG-GELAKYEC-HLCG 341
>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
Length = 305
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 157 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 14
H YI G L+A +D+ + +++F LS NE +RAP VII
Sbjct: 213 HGYIVGPLYADY--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258
>SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09)
Length = 305
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 157 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 14
H YI G L+A +D+ + +++F LS NE +RAP VII
Sbjct: 213 HGYIVGPLYADS--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258
>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
Length = 281
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 157 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 14
H YI G L+A +D+ + +++F LS NE +RAP VII
Sbjct: 213 HGYIVGPLYADS--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/77 (25%), Positives = 29/77 (37%)
Frame = +3
Query: 195 HTAHGDSKMDSRDLCAMMVFITTDTIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDT 374
HT H +K RD+C V T + +H R R I + T +S T
Sbjct: 383 HTGHMRNKRHVRDICGTSVTYGTYAEQASRTRHMRNKRHIRDICGTSVTYETYAEQASRT 442
Query: 375 YSLHSGTQFRKHC*SAV 425
+ S R C ++V
Sbjct: 443 GHMRSKRHIRDICGTSV 459
>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 259 VINTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIF----GLLFASVSILDMMHRLT 92
+ ++ +K+ ++++S W +CI +VC ++ +F G L + + DM ++ T
Sbjct: 59 IYRSLFTYKNSLTMIISIWIICI--FYVCIFAVLQGPVFYFHAGKLICHIRLHDMAYKNT 116
Query: 91 LNI 83
NI
Sbjct: 117 WNI 119
>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 264 DTIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKHC 413
DTI+ RM+ H + A H +T + +DT H T+F+ C
Sbjct: 128 DTIQTRMQTHMQTCYRHACRHATNKHADTHADAHADTLQTHMQTRFKHAC 177
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +3
Query: 114 RIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVFITTDTIKG-RMRK 290
R++T A + + CI ++ Q KD + + +RD+ V + T + + RK
Sbjct: 1426 RVKTTAETKEILSKCICSKTQVKDEQVRGSRATQTSHTRDVA---VNVPTPKHRALKERK 1482
Query: 291 HKRESRAIAAGLP-------RQDHFNTLHTSSSDTY 377
+ RA+ G+ N +H+S++D Y
Sbjct: 1483 PSKSGRAVDVGVQTHLDSDLESPSVNRIHSSNTDGY 1518
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 417 SAVY*SPGH-KRSRRFCHRYANVFYRTSRGCTQYYAAFPALKKGQESPLQYYL 572
S+V GH KR+RR H+Y + RG Q PA K + LQ+ L
Sbjct: 68 SSVSSPEGHEKRTRRLSHKYDEFEQPSVRGMAQPNPQQPAPKTRTTNQLQFLL 120
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 261 TDTIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDTYSLHSGTQF 401
T I+ +KHK + RAI+ G ++ H L S T + H G +F
Sbjct: 694 TGMIEALAKKHKYDCRAISMGQGQEVHARKLLNSFMQT-NCHLGLEF 739
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 385 IQEHNLGNIVDQLCTSLQDIKDH 453
+ EH+L +++D+ C L + DH
Sbjct: 1104 VTEHDLADVIDKSCAQLPRVMDH 1126
>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 272
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 307 GR*LRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTS-LQDIKDHEDSVIGMPTC 483
G LR V+ T +++P + + + +L L +I DHE + P C
Sbjct: 115 GHGLRPVDVEFMKALHTKVNIVPVIAKSDSLTKTEISRLKRKVLDEIADHEIKIYSFPEC 174
Query: 484 SIEQAEAVLNI 516
E E L I
Sbjct: 175 DSEDDEEFLAI 185
>SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15)
Length = 684
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 AIAAG-LPRQDHFNTLHTSSSDTYSLHSGTQFRKHC 413
A+AAG L H NT T+S+DT H +F + C
Sbjct: 300 ALAAGALHIARHVNTAGTASADTRCQHETERFAQQC 335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,506
Number of Sequences: 59808
Number of extensions: 424667
Number of successful extensions: 995
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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