Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1060
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    33   0.21 
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    31   0.64 
L10990-2|AAL02453.1|  362|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/79 (26%), Positives = 41/79 (51%)
 Frame = -2

Query: 268 VSVVINTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTL 89
           +++ I  I ++  ++  ++ P    + +S      +IHA +F  +F  V ILD +HR + 
Sbjct: 203 IAIAIEAIESYFDKKKTVVMPDGTDVMQSLANSGSVIHA-VFTQMF--VCILDPLHRESF 259

Query: 88  NIFAIALSLASNEYTLRAP 32
            I  + L+L    +T+ AP
Sbjct: 260 TIDELVLTLQLLFFTIAAP 278


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -3

Query: 360 KCGVC*SDLDVAGPQLSPCSLSCVYASCP**CLSL*TPSSHINLVSPFCYRRGPCV*IDP 181
           KCG+C +     G  ++P  ++C +  C   C+ +        ++ PFC R   C  I P
Sbjct: 64  KCGICLAQYWSTG-DMAPRVMNCGHTYCGS-CIEIFAEQKDGMVICPFCTRTHFCNTIHP 121

Query: 180 LFVLRY*YMLISLACCLL 127
           L      ++LI L   L+
Sbjct: 122 LPFFSENHLLIILCSSLI 139


>L10990-2|AAL02453.1|  362|Caenorhabditis elegans Hypothetical
           protein C30A5.6 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 494 KQRLYSILRCISSSEERARVTFAVLSASTCLV 589
           KQ+L SI++ ++  E      F+VLSA TCL+
Sbjct: 142 KQQLPSIVKALTDLEIMIFTIFSVLSALTCLM 173


>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 403 GNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVLNITL 522
           G I      S+ D++D   S  G+P C +E A  V N+TL
Sbjct: 90  GEIEQDPDESIIDVRDGFLSKKGIPECEMETARLVHNLTL 129


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +3

Query: 180 KDRFIHTAHGDSKMDSRDLCAMMVFITTDTIKGRMRKHK------RESRAIAAGLPRQDH 341
           +D++     GD+ ++    C   V  T D +KG M K        RE R +  G  R+ H
Sbjct: 247 EDKWAEIRIGDAHLECFAPCTRCVLTTVDPVKGEMSKEMQPLKKLREFRLVPDGKMRKVH 306

Query: 342 FNT 350
             +
Sbjct: 307 MES 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,862
Number of Sequences: 27780
Number of extensions: 304364
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)