Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1060
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    31   0.59 
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    30   1.0  
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    29   3.2  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    28   5.5  
At2g39690.1 68415.m04869 expressed protein contains Pfam profile...    28   5.5  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    28   5.5  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    28   5.5  
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    27   7.3  
At2g16040.1 68415.m01839 hAT dimerisation domain-containing prot...    27   7.3  
At1g04390.1 68414.m00429 expressed protein                             27   9.6  

>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase family
            protein similar to inositol polyphosphate 5-phosphatase
            II isoform (GI:15418718) [Mus musculus]; contains 6 (5
            weak) Pfam: Pf00400 WD domain, G-beta repeats and Pfam
            PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 222  DSRDLCAMMVFITTDTIKGRMRKHKRESRAIAAGLPRQDHFNTLHTSSSDTYSLH 386
            D+RD   ++V +         RKH+   R    G P ++HFN    +S    +LH
Sbjct: 1024 DTRDKEVILVLVVHGRFSTETRKHRIRVRHCPRGGPAKNHFNDGTKTSGQINALH 1078


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 ISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVFITTDTIKGR 281
           ISN     D+ I TA G  K+DS  LC + V+   + + G+
Sbjct: 383 ISNSSSVSDQVISTAFGSKKVDS-PLCWLEVYCNGENMDGK 422


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 513 YYAAFPALKKGQESPLQYYLPPPA 584
           Y   +P     Q SP+Q+Y PPPA
Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 465
           L+ L  T C     L  ++D LC  L+   +H+DSV
Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283


>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 498

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -2

Query: 163 LIHAYI-FGLLFASVSILDMMHRLTLNIFAIAL-SLASNEYTLRAP 32
           ++HA++ +GL  +   +L +M++ +LN+  I L +LA   + LR P
Sbjct: 310 IMHAFLEYGLPSSHNRLLTLMNKASLNVGGIVLNALAIEHFVLRHP 355


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 474 ANVFYRTSRGCTQYYAAFPALKKGQESPLQYYLPPPAW 587
           AN FY +     ++Y+  P + K    P+++Y PPP +
Sbjct: 23  ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 474 ANVFYRTSRGCTQYYAAFPALKKGQESPLQYYLPPPAW 587
           AN FY +     ++Y+  P + K    P+++Y PPP +
Sbjct: 23  ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -2

Query: 256 INTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTL 89
           +N I  HKS    ++    +C+N   +   LLI + I  +  + +S+L+ + RL+L
Sbjct: 626 MNLIREHKSLNDDIVLKSLICLNSVVIFKILLIDSKILLVDNSRISLLNNLTRLSL 681


>At2g16040.1 68415.m01839 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 382

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 167 RRTNKGSIYTHGP-RR*QNGLTRFMCDD 247
           RR NKG I+ H P  + QN LT  + +D
Sbjct: 14  RRANKGEIHCHFPSHKSQNELTELLAND 41


>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +1

Query: 403 GNIVDQLCTSLQDIKD 450
           GN+ D+LCT+L++I+D
Sbjct: 471 GNLKDRLCTTLKEIRD 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,616
Number of Sequences: 28952
Number of extensions: 271492
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)