Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1059
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 31 0.19
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.59
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.1
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 7.2
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.2
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 7.2
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 9.5
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.5
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 427 SGCGRCRVWSMFVRYVRFSELVF*YNAAQKLYIF 528
+GCG+ VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 610 ARKIRGRPENAGPDPVRNVRRFSRV 536
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSS--RSEPYLPSIGF 159
+ ++S +SSP RS+ +TPP S + P+ P +GF
Sbjct: 3 SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGF 45
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 464 TNIDQTRHRPHPLPVQTRHAPV 399
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 52 STLKTSVRRGNPKRPEDAAERSGKSFLFCLSVR 150
S L +S+ R +PKRP D+ L SV+
Sbjct: 106 SPLSSSLHRSSPKRPHDSLGEESPGKLLRTSVK 138
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 352 FPYLHYSID*RLFTLETCCGYGYEPARHL 266
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 235 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQASLGYPVEHSFLK 56
P VSGH LR+ IS SM +ERS R ++ + S+ Y + K
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELID-SMAYDCVSNLRK 675
Query: 55 SME 47
E
Sbjct: 676 MPE 678
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 125 LFPDLSAASSGLFGLPRRT 69
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 197 STAFAAVSGYS-LRTLKIQVRMYVEMSRRFVPI 292
S F A +G++ ++ +++ +R+Y +M R VPI
Sbjct: 318 SLQFRAPAGHARIKNIELFIRLYSQMYRHCVPI 350
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 211 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQASLGYPVEHSFLKS 53
+K + +P HI LL + E + + +++ + SRRR +L EH LK+
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLKA 1086
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -2
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 270
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 269 -SPRTSSPEFSRSAESIRTP 213
SP+ + ++ +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/78 (26%), Positives = 30/78 (38%)
Frame = -2
Query: 266 PRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGLF 87
P SS +A S +P +R SS S YL ++ K F + +S
Sbjct: 202 PAFSSKHGFSNALSTASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEPPASSAS 261
Query: 86 GLPRRTLVFKVDGTIIES 33
PR T +GT I +
Sbjct: 262 TSPRNTPTPSNNGTSINA 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,554
Number of Sequences: 5004
Number of extensions: 59326
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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