Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1059
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 33 0.20
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.80
06_01_0350 + 2534422-2535615 31 1.1
12_02_0407 - 18654134-18654172,18654913-18655803 29 2.4
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.4
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 3.2
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.3
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.3
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 29 4.3
11_05_0087 + 18970741-18972702 28 5.6
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 7.5
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 7.5
10_07_0134 + 13289641-13290216,13290435-13290914 28 7.5
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 28 7.5
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 7.5
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 7.5
03_05_0565 + 25667391-25667696 28 7.5
02_02_0590 - 11894721-11895188,11895684-11895851 28 7.5
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 27 9.9
08_02_1080 - 24197514-24199415 27 9.9
>05_06_0098 + 25560158-25560925
Length = 255
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -2
Query: 443 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 264
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
Query: 263 RTSSP 249
P
Sbjct: 91 SQRPP 95
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 464 TNIDQTRH------RPHPLPVQTRHAPVLRANP 384
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 159 PWNSNAQAEKKTLPGPLGGVFRP 91
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 16 EPGSGSDSIIVPSTLKTSVRRGNPKRPEDAAERSGKSFLFCLSVRVPWNPIEGRY 180
E G+G +++ PST +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 345
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 363 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILI*CGSKTV 521
W R G R+G ++ G+ R VPG+V R L + +V ++ G KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 428 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 315
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 440 RPHPLPVQTRHAPVLRANPYSEVTDP 363
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 304 TCCGYGYEPARHLHVHPHLNFQGP 233
+CCG+ R+ + PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>11_05_0087 + 18970741-18972702
Length = 653
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 145 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 264
VR P P+ GR+G RE R + + + G+ VR
Sbjct: 56 VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 466 ARTSTRPGTGRIRFPSKPDTPRSSE 392
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 482 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 309
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 308 GDLLR 294
D R
Sbjct: 61 NDCPR 65
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -2
Query: 590 AGERGSGSSPKRKTIFASVILNIYSF*AALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTR 411
A G GSS +++ + LN+ A+ +N + + N+D +R P P P
Sbjct: 201 AAAGGGGSSCRQEAASELINLNVKETEASC---SNRSENSSEINLDISRPAPPPPPPPAN 257
Query: 410 HAPVLRANPY 381
+PV R P+
Sbjct: 258 ESPVNRGIPF 267
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 37 SIIVPSTLKTSVR-RGNPKRPED 102
S+I ST+ T+V GNPK PED
Sbjct: 311 SVIAESTVTTTVNGEGNPKSPED 333
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 454 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 368
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 320 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 180
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 296 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 150
RI++ A PR SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 28 GSDSIIVPSTLKTSVRRGNPKRPEDAAERSGKSFLFCL 141
G ++ S + V GN P +E+ G ++L CL
Sbjct: 65 GGGGQVIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 176 LPSIGFHGTRTLRQKRKLFPDLSAASSGLFGLPRRTLVFKV 54
+PS GFH + LR L P LS + L R L F++
Sbjct: 507 IPSDGFHSLQLLRFSAPLLPLLSFLDGAMPKLQRLELRFRI 547
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -3
Query: 157 MELERSGRKENSSRTSRRRLQASLGYPVEHSFLKSMERLLNH 32
+ELER EN+ T +++LQ +L P E S L ++LLN+
Sbjct: 42 IELERG---ENA-HTVKKKLQLALNIPTEESSLTCGDQLLNN 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,193
Number of Sequences: 37544
Number of extensions: 452205
Number of successful extensions: 1696
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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