Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1059
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa...    31   0.88 
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.0  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.6  
At5g42370.1 68418.m05159 expressed protein                             29   3.6  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    28   4.7  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.7  
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea...    28   6.2  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   6.2  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   6.2  
At5g22390.1 68418.m02612 expressed protein                             27   8.2  
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ...    27   8.2  
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ...    27   8.2  
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    27   8.2  
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa...    27   8.2  
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa...    27   8.2  

>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}
          Length = 316

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 167 IGFHGTRTLRQKRKLFPDLSAASSGLFGLPRRT---LVFKVDGTIIES 33
           IGF   +TLR K +     S  SS +  LP R+   L+F  DG I+ES
Sbjct: 30  IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 448 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 353
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 235 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 101
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 174 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 64
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 37  SIIVPSTLKTSVRRGNPKRPEDAAERSGKSFLFC--LSVRVPWNPI 168
           S++   +L TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 230 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 132
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to guanine nucleotide-binding protein beta 5
           (GI:1001939) [Mesocricetus auratus]
          Length = 425

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 211 GGVRILSADLENSGEDVRGDVAPVRTH 291
           GG+++ S + ++S   +R DV+P RTH
Sbjct: 12  GGLKVESGEQKSSWPTMRFDVSPYRTH 38


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 ERSGKSFLFCLSVRVPWNPIEG 174
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -2

Query: 500 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
           Y NT+  K+  +  ID   HRP     +T H  VL A P          L       +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161

Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
           A  L    LL   ++  +T+  T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192


>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -2

Query: 500 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
           Y NT+  K+  +  ID   HRP     +T H  VL A P          L       +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161

Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
           A  L    LL   ++  +T+  T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 25  SGSDSIIVPSTLKTSVRRGNPKRPEDAAERSGKSFLFCLSVRVPWN-PIEGRYGSERE 195
           S SD +   +  K S R  N K+P D A  SGK           WN    G++ S +E
Sbjct: 109 STSDRVGFSTGQKISSRVSNSKKPSDFAVGSGKKVRHQNGTSRGWNRGTSGKFESSKE 166


>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 530

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 157 MELERSGRKENSSRTSRRRLQASLGYPVEHSFLKSMERLLNH 32
           MEL+RS    ++  T +RRLQ +L +P E S L   + +L +
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVLTN 97


>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 650

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 157 MELERSGRKENSSRTSRRRLQASLGYPVEHSFLKSMERLLNH 32
           MEL+RS    ++  T +RRLQ +L +P E S L   + +L +
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVLTN 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,008
Number of Sequences: 28952
Number of extensions: 334238
Number of successful extensions: 1020
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)