Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1058
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       30   1.5  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   1.9  
04_04_0017 + 22176759-22177406                                         29   4.4  
01_06_0305 - 28348398-28349306                                         29   4.4  
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338...    28   5.9  
02_05_0212 - 26808484-26809368                                         28   5.9  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 635 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSQIV 501
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S ++
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVISPVL 518


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 453 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 352
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>04_04_0017 + 22176759-22177406
          Length = 215

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 459 DAHEWINEIPTVPIYYLRNHSQGNGLGRISGERR 560
           DAHE + ++P +    LR   + N + RISGERR
Sbjct: 85  DAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERR 118


>01_06_0305 - 28348398-28349306
          Length = 302

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 213 SCAIGTILYDRRSTSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQ 386
           +CA G  LYD  + +  N +G G +  L    HC+   G  ++ +S++ S CQ+  ++
Sbjct: 48  TCATG--LYDFVNIAFLNVYGSGLTPVLNLAAHCNPDAGTCKS-LSSEISSCQQSGVK 102


>04_03_0128 -
           11530618-11530838,11532683-11532809,11533746-11533892,
           11533981-11534082,11534207-11534332,11535507-11535584,
           11535780-11535827,11536005-11536193
          Length = 345

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 294 DSRIPLVRASSELTLNGGRTESCRSRTKRNRHDLTARKIRGRP 166
           DS   L  +SSE+  N G+ E    +TK++    TA++  GRP
Sbjct: 277 DSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSFNTAKRPVGRP 319


>02_05_0212 - 26808484-26809368
          Length = 294

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 647 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSQIVDRDSGN 483
           S   +K  P  A+  +SP   R +  +  +S P  SP PVPL  V  + +  +G+
Sbjct: 56  SSSSSKAKPA-ASSKVSPAKPR-KPKAKAASVPPSSPPPVPLGPVPALTELPAGH 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,361,749
Number of Sequences: 37544
Number of extensions: 413487
Number of successful extensions: 1311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)